NVlabs / protcomposerLinks
☆50Updated 4 months ago
Alternatives and similar repositories for protcomposer
Users that are interested in protcomposer are comparing it to the libraries listed below
Sorting:
- Joint Sequence-Structure Generation of Nucleic Acid and Protein Complexes with SE(3)-Discrete Diffusion☆58Updated last year
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆84Updated last month
- This repository implements Gibbs sampling with Graph-based Smoothing☆40Updated last year
- Code for the paper Context-Guided Diffusion for Out-of-Distribution Molecular and Protein Design☆39Updated last year
- In-silico design pipeline for evaluating protein structure diffusion models.☆27Updated last year
- Implementation of AlphaFold 3 in PyTorch Lightning + Hydra☆35Updated last year
- This repository houses all the scripts and notebooks utilized for generating, analyzing, and validating the mdCATH dataset. Some user ex…☆52Updated last year
- Official implementation of "Learning the language of protein structures"☆39Updated 5 months ago
- Code implementation of "Diffusion probabilistic modeling of protein backbones in 3D for the motif-scaffolding problem" https://arxiv.org/…☆73Updated 2 years ago
- Implementation of the Confidence Bootstrapping procedure for protein-ligand docking.☆27Updated last year
- A comprehensive benchmark on the performances of multiple protein backbone generative models.☆64Updated 6 months ago
- Official repository for discrete Walk-Jump Sampling (dWJS)☆59Updated last year
- RNAFlow: RNA Structure & Sequence Design via Inverse Folding-Based Flow Matching☆78Updated last year
- A standardized protein design benchmark for motif-scaffolding problems☆70Updated 4 months ago
- FrameDiPT: an SE(3) diffusion model for protein structure inpainting☆57Updated last year
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆84Updated last year
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆96Updated 6 months ago
- Implementation of DiffPack: A Torsional Diffusion Model for Autoregressive Protein Side-Chain Packing☆88Updated 2 years ago
- Structure-conditioned masked language modeling for protein sequence design☆69Updated last year
- Rotamer Density Estimator is an Unsupervised Learner of the Effect of Mutations on Protein-Protein Interaction (ICLR 2023)☆59Updated last year
- The official implementation of DiffAbXL benchmarked in the paper "Exploring Log-Likelihood Scores for Ranking Antibody Sequence Designs",…☆89Updated 5 months ago
- The Enhanced Database of Interacting Protein Structures for Interface Prediction☆50Updated 3 months ago
- Learning to design protein-protein interactions with enhanced generalization (ICLR 2024)☆49Updated 2 months ago
- A diffusion model for structure-based drug design with faster inference from learned representations of protein structure.☆32Updated last year
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆37Updated 4 months ago
- Codebase of the paper "Str2Str: A Score-based Framework for Zero-shot Protein Conformation Sampling" (ICLR 2024)☆80Updated last year
- This repo contains the codes for our paper "End-to-End Full-Atom Antibody Design"☆121Updated 9 months ago
- NeurIPS 2023 Spotlight paper: Full atom protein pocket design via iterative refinement☆47Updated 2 years ago
- Generative modeling of molecular dynamics trajectories☆180Updated 2 weeks ago
- Codebase of paper "Structure Language Models for Protein Conformation Generation" (ICLR'25)☆66Updated 9 months ago