☆58Jul 22, 2025Updated 8 months ago
Alternatives and similar repositories for protcomposer
Users that are interested in protcomposer are comparing it to the libraries listed below
Sorting:
- Utility scripts to generate and evaluate parametrically guided beta barrel protein backbone structures.☆14Nov 14, 2025Updated 4 months ago
- Proteina is a new large-scale flow-based protein backbone generator that utilizes hierarchical fold class labels for conditioning and rel…☆245Jul 24, 2025Updated 7 months ago
- Codebase of the paper "Aligning Protein Conformation Ensemble Generation with Physical Feedback" (ICML 2025)☆16Jul 6, 2025Updated 8 months ago
- Display PackedPose objects, Pose objects, or PDB files within a Jupyter notebook and Google Colab☆11Oct 16, 2022Updated 3 years ago
- protein backbone refinement☆15Sep 12, 2024Updated last year
- ☆221Mar 2, 2024Updated 2 years ago
- Full-Atom Peptide Design based on Multi-modal Flow Matching (ICML 2024)☆103May 25, 2025Updated 9 months ago
- This repository implements Gibbs sampling with Graph-based Smoothing☆41May 29, 2024Updated last year
- ☆135Jun 3, 2025Updated 9 months ago
- Repository for Fast Non-autoregressive Inverse Folding with Discrete Diffusion☆18Feb 8, 2024Updated 2 years ago
- Guiding diffusion models for antibody sequence and structure co-design with developability properties.☆37Nov 7, 2024Updated last year
- Public Release of ProGen3 family of Models☆104Jul 21, 2025Updated 8 months ago
- FoldFlow: SE(3)-Stochastic Flow Matching for Protein Backbone Generation☆278Dec 10, 2024Updated last year
- The Family of Diffusion Protein Language Models (DPLM)☆315Jul 25, 2025Updated 7 months ago
- ☆19Apr 14, 2025Updated 11 months ago
- Source code for RNA-FrameFlow: SE(3) Flow Matching for 3D RNA Backbone Design☆95Oct 15, 2025Updated 5 months ago
- A Text-guided Protein Design Framework, Nat Mach Intell 2025 (https://www.nature.com/articles/s42256-025-01011-z)☆102Jan 11, 2025Updated last year
- ☆39Mar 7, 2026Updated 2 weeks ago
- A benchmark for comprehensive evaluation on protein structure tokenization methods☆46Aug 2, 2025Updated 7 months ago
- Fast protein backbone generation with SE(3) flow matching.☆317Jul 19, 2024Updated last year
- Diffusion-based all-atom protein generative model.☆233Aug 27, 2025Updated 6 months ago
- ☆36Jun 17, 2025Updated 9 months ago
- Template-based protein design with Raygun☆77Feb 7, 2026Updated last month
- ☆17Mar 26, 2024Updated last year
- Protein Engineering via Exploration of an Energy Landscape☆129Mar 10, 2026Updated last week
- Fast protein structure searching or your money back☆118Updated this week
- AlphaFold Meets Flow Matching for Generating Protein Ensembles☆518Oct 21, 2025Updated 5 months ago
- Aligning protein generative models with experimental fitness☆120Mar 12, 2026Updated last week
- Generating and scoring novel enzyme sequences with a variety of models and metrics☆72Feb 21, 2026Updated last month
- The official implementation of NeurIPS2024 paper "SubgDiff: A Subgraph Diffusion Model to Improve Molecular Representation Learning."☆11May 28, 2025Updated 9 months ago
- Fragment binding prediction with ColabFold☆42Nov 9, 2025Updated 4 months ago
- Pytorch implementation for ICML 2024 paper Proteus: Exploring Protein Structure Generation for Enhanced Designability and Efficiency.☆88Jun 23, 2024Updated last year
- ☆36Mar 19, 2025Updated last year
- Conditioning diffusion models for scaffolding protein motifs. A repository for my master's dissertation.☆12Dec 10, 2024Updated last year
- Versatile human antibody sequence design☆22May 27, 2025Updated 9 months ago
- ☆96Oct 14, 2025Updated 5 months ago
- [NeurIPS 2025 spotlight] Efficient factorized variant of the IPA module.☆46Nov 14, 2025Updated 4 months ago
- Code for ICML 2023 paper "Reprogramming Pretrained Language Models for Antibody Sequence Infilling"☆24Sep 18, 2025Updated 6 months ago
- A NumPy port of the foldseek code for encoding protein structures to 3di.☆79Aug 22, 2025Updated 7 months ago