cssblab / iOmicsPASS
Data Integration tool utilizing network information for predictive analyses
☆16Updated last year
Alternatives and similar repositories for iOmicsPASS:
Users that are interested in iOmicsPASS are comparing it to the libraries listed below
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 2 years ago
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆35Updated 3 years ago
- a python package for KEGG pathway enrichment analysis with multiple gene lists.☆35Updated 7 years ago
- Large-scale automatic feature selection for biomarker discovery in high-dimensional OMICs data☆28Updated 9 months ago
- 🏺 Exploring novel tumor epitope identification☆35Updated 4 years ago
- Extension of the WGCNA program to improve the eigengene similarity of modules and increase the overall number of genes in modules.☆61Updated 3 years ago
- This is the public repository for the EPIC tool.☆17Updated 2 years ago
- Tied Diffusion for Subnetwork Discovery (TieDIE)☆37Updated 3 years ago
- 3D hotspot mutation proximity analysis tool☆46Updated last year
- insilico Pathway Activation Network Decomposition Analysis (iPANDA) package. Owned by Insilico Medicine Inc. iPANDA is a pathway analysis…☆25Updated 7 years ago
- Code for the analyses in the human reference interactome paper.☆26Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Detect somatic variants from tumor and normal WGS/WXS data☆15Updated 3 weeks ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆48Updated 5 years ago
- ☆23Updated 3 years ago
- Network-based project to explore gene connectivity through biological scales☆23Updated 3 months ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- Code to run OncoSig Analyses☆18Updated 4 years ago
- ☆33Updated 2 years ago
- Dynamic models for single-cell RNA-seq time series.☆39Updated 6 years ago
- A Python package for gene network analysis☆32Updated 2 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆16Updated 4 years ago
- Concise: Keras extension for regulatory genomics☆35Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated this week
- Knowledge-primed neural networks☆35Updated last year
- DRUG (Digital RNA with pertUrbation of Genes)-seq data analysis pipeline☆21Updated 3 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆36Updated 5 years ago
- An Improved Algorithm to Measure the Semantic Similarity of Gene Ontology Terms☆17Updated 4 years ago
- ☆19Updated 3 years ago