cssblab / iOmicsPASSLinks
Data Integration tool utilizing network information for predictive analyses
☆16Updated 4 months ago
Alternatives and similar repositories for iOmicsPASS
Users that are interested in iOmicsPASS are comparing it to the libraries listed below
Sorting:
- Tools related to the Genomics of Drug Sensitivity in Cancer (GDSC) projects (http://www.cancerrxgene.org/ )☆36Updated 3 years ago
- GREIN : GEO RNA-seq Experiments Interactive Navigator☆50Updated 6 years ago
- A 3-Dimensional View of Human Metabolism and Disease☆30Updated 7 years ago
- Prize-Collecting Steiner Forests for Interactomes☆61Updated last year
- A project for exploring differentially active signaling paths related to proteomics datasets☆44Updated last month
- Code for the analyses in the human reference interactome paper.☆27Updated 2 years ago
- Multi-omics disease sub-type specific drug repositioning aided with expression signatures from ConnectivityMap☆17Updated 5 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Hierarchical HotNet is an algorithm for finding hierarchies of active subnetworks.☆38Updated 5 years ago
- ☆38Updated last year
- Connectivity Map analysis in MATLAB☆46Updated 3 years ago
- Python API for Xena Hub☆53Updated 2 years ago
- 3D hotspot mutation proximity analysis tool☆48Updated 2 years ago
- ARCHS4 RNA-seq processing scripts and web server pages.☆58Updated 4 years ago
- Converts Ensembl, Uniprot, and HGNC IDs to Entrez Gene Id☆46Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆51Updated 6 years ago
- CMap Notebooks for LINCS 2020 Workshop☆46Updated 3 years ago
- Knowledge-primed neural networks☆38Updated 2 years ago
- IPAW: a Nextflow workflow for proteogenomics☆28Updated last year
- COSMOS (Causal Oriented Search of Multi-Omic Space) is a method that integrates phosphoproteomics, transcriptomics, and metabolomics data…☆62Updated 2 months ago
- MONET : MOdularising NEtwork Toolbox - https://doi.org/10.1093/bioinformatics/btaa236☆45Updated 4 years ago
- Generate Robust Disease-Specific Response Signatures from the LINCS-L1000 Data☆15Updated 3 years ago
- ☆34Updated 2 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 4 months ago
- GeneWalk identifies relevant gene functions for a biological context using network representation learning☆131Updated last year
- DRUGZ software☆23Updated 4 years ago
- Annotation of genomic regions using transcription factor binding sites and epigenetic data☆41Updated 3 years ago
- Search across publicly available datasets to find instances where a drug or cell line of interest has been profiled.☆46Updated 7 years ago
- A simple pythonic interface to biomart.☆56Updated 5 years ago
- Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.☆84Updated 4 years ago