CamaraLab / TDA-TCGA
R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
☆10Updated 3 years ago
Alternatives and similar repositories for TDA-TCGA:
Users that are interested in TDA-TCGA are comparing it to the libraries listed below
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆25Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆10Updated 4 months ago
- An R package for extracting mutational signatures from vcf files☆10Updated 2 weeks ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆26Updated 4 years ago
- ☆15Updated 7 months ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 2 years ago
- Code to reproduce TNBC analysis and figures☆23Updated 2 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆25Updated last year
- Jupyter notebook repository for reproducing analysis in "DNA Methylation Landscape of the Mouse Brain at Single-Cell Resolution"☆12Updated 4 years ago
- scRNAseq integration with triplet neural networks☆40Updated 2 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆22Updated 7 months ago
- CiteFuse:☆27Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 2 years ago
- Marker Selection by matching manifolds and elastic net☆23Updated 4 months ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆13Updated 8 months ago
- Code associated with MIX-seq manuscript☆14Updated 4 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆22Updated 3 years ago
- XEnograft Visualization & Analysis☆11Updated 3 months ago
- Access and Format Single-cell RNA-seq Datasets from Public Resources☆35Updated 2 months ago
- Variant impact phenotyping using Perturb-seq☆9Updated 10 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated 11 months ago
- Automated marker-based annotation of cell types☆13Updated 2 years ago
- Collection of scripts for pre- and postprocessing neoantigen discovery calls.☆9Updated 5 years ago
- Analaysis for the batch correction paper☆9Updated last month
- Single Cell Consensus Clustering with Speed☆20Updated 2 years ago
- Clone of the Bioconductor repository for the scRNAseq package.☆25Updated last month
- TIGS (Tumor Immunogenicity Score) project https://doi.org/10.7554/eLife.49020☆31Updated 3 years ago
- ☆9Updated 3 years ago