CamaraLab / TDA-TCGALinks
R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
☆10Updated 3 years ago
Alternatives and similar repositories for TDA-TCGA
Users that are interested in TDA-TCGA are comparing it to the libraries listed below
Sorting:
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 10 months ago
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- ☆28Updated last year
- An R package for extracting mutational signatures from vcf files☆11Updated 6 months ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆25Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆14Updated 4 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 5 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆24Updated last year
- From IDAT to beta.☆25Updated 7 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Updated 2 years ago
- ☆12Updated last year
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Updated 3 years ago
- 🏺 Exploring novel tumor epitope identification☆34Updated 4 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- ☆12Updated 4 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆18Updated 3 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated this week
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last month
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 2 years ago
- ☆17Updated last year
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 7 months ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 2 months ago