CamaraLab / TDA-TCGALinks
R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
☆11Updated 3 years ago
Alternatives and similar repositories for TDA-TCGA
Users that are interested in TDA-TCGA are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- An R package for extracting mutational signatures from vcf files☆11Updated 8 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Updated 3 years ago
- ☆12Updated last year
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated last year
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Updated 2 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Updated 3 years ago
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- From IDAT to beta.☆25Updated 7 years ago
- ☆28Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆13Updated 6 months ago
- R package for transfer learning of single-cell RNA-seq denoising☆30Updated 3 years ago
- CiteFuse:☆28Updated 2 years ago
- ☆22Updated 5 years ago
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last week
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- Fast motif matching in R☆46Updated last year
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- ☆12Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆39Updated 3 years ago
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆22Updated last year
- Code for the paper "A comprehensive examination of Nanopore native RNA sequencing for characterization of complex transcriptomes"☆19Updated 5 years ago
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆34Updated last month
- ShinyLearner: a software framework for performing benchmarks of machine-learning classification algorithms☆18Updated 3 years ago
- IRIS: Isoform peptides from RNA splicing for Immunotherapy target Screening☆26Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago