CamaraLab / TDA-TCGALinks
R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
☆11Updated 4 years ago
Alternatives and similar repositories for TDA-TCGA
Users that are interested in TDA-TCGA are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆14Updated 3 years ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated last year
- epigenome analysis to rank transcription factors☆14Updated 5 years ago
- An R package for extracting mutational signatures from vcf files☆11Updated 9 months ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Updated 2 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆15Updated 7 months ago
- Code to reproduce TNBC analysis and figures☆25Updated 3 years ago
- Single cell STEM (scSTEM) is a shiny app based R package for visualizing and clustering genes in pseudotime ordered single cell RNA-seq d…☆19Updated 3 years ago
- A user-friendly R pipeline for biomarker discovery in single-cell transcriptomics☆13Updated 2 years ago
- ☆25Updated 6 months ago
- From IDAT to beta.☆25Updated 7 years ago
- A computational method for comparing cellular profiles with the flexibility to place a higher weight on functional features of interest.☆12Updated 2 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- 🏺 Exploring novel tumor epitope identification☆37Updated 5 years ago
- ☆28Updated 2 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- ☆22Updated 6 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- Netbooks is a JupyterHub catalog of use cases in gene regulatory network inference using netZoo methods..☆44Updated last month
- Single cell proteomics data processing☆29Updated last month
- SignalingProfiler is a pipeline that builds signaling networks to cellular phenotypes from multiomics data.☆15Updated last month
- TCGA Workflow: Analyze cancer genomics and epigenomics data using Bioconductor packages☆49Updated 2 years ago
- ☆12Updated last year
- Comparison of RNA-seq time course differential expression analysis tools☆13Updated 7 years ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 6 years ago
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆24Updated 11 months ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago