CamaraLab / TDA-TCGALinks
R package for the identification of cancer-associated mutated genes using gene expression and mutation data.
☆10Updated 3 years ago
Alternatives and similar repositories for TDA-TCGA
Users that are interested in TDA-TCGA are comparing it to the libraries listed below
Sorting:
- scRNAseq integration with triplet neural networks☆41Updated 2 years ago
- Snakemake workflow to benchmark scRNA-seq data simulators☆13Updated 3 years ago
- An R package for extracting mutational signatures from vcf files☆11Updated 7 months ago
- MOJITOO: a fast and universal method for integration of multimodal single cell data☆11Updated 10 months ago
- An R package to fit dose response curves for data from the Genomics of Drug Sensitivity of Cancer (GDSC) project.☆28Updated 2 years ago
- Processed rna-seq data, copy number variation data, and methylation data on GEO and TCGA☆28Updated 2 years ago
- A unified downloader+preprocessor for cancer genomics datasets☆16Updated last year
- netNMF-sc: A network regularization algorithm for dimensionality reduction and imputation of single-cell expression data☆23Updated 4 years ago
- rCASC: reproducible Classification Analysis of Single Cell Sequencing Data☆13Updated 5 months ago
- 🏺 Exploring novel tumor epitope identification☆36Updated 4 years ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Updated 2 years ago
- Unsupervised cell functional annotation for single-cell RNA-Seq☆22Updated 2 years ago
- ☆12Updated last year
- An R package for single-cell CRISPR screen data analysis emphasizing statistical rigor, massive scalability, and ease of use.☆33Updated last week
- Comparison of RNA-seq time course differential expression analysis tools☆13Updated 7 years ago
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- A GUI tool for easy and smooth visualisation and analysis of Spatial Transcriptomics datasets☆15Updated 4 years ago
- Code to reproduce TNBC analysis and figures☆24Updated 3 years ago
- A study to compare methods for clustering of scRNA-seq data☆43Updated last year
- code and data for Liu, Schilling, et al Nat Med 2019☆17Updated last year
- A R/MATLAB package to construct and compare gene regulatory networks from single-cell transcriptomic data☆23Updated 8 months ago
- Predicted cell-cell interactions of the aging mouse brain☆20Updated 5 years ago
- A single-cell and spatial RNA-seq database for Alzheimer’s Disease☆24Updated last year
- XEnograft Visualization & Analysis☆11Updated last month
- epigenome analysis to rank transcription factors☆13Updated 5 years ago
- ☆18Updated 4 years ago
- A deep learning-based tool for alignment and integration of single cell genomic data across multiple datasets, species, conditions, batch…☆38Updated 3 years ago
- HiC-Reg is a tool to predict Hi-C contact counts from one-dimensional regulatory signals☆11Updated 5 years ago
- Matilda is a multi-task framework for learning from single-cell multimodal omics data. Matilda leverages the information from the multi-m…☆21Updated 3 months ago
- TIDE (Tumor Immune Dysfunction and Exclusion), a gene expression biomarker to predict the clinical response to immune checkpoint blockade…☆35Updated 3 years ago