ChrisMaherLab / INTEGRATE-VisLinks
☆16Updated 2 years ago
Alternatives and similar repositories for INTEGRATE-Vis
Users that are interested in INTEGRATE-Vis are comparing it to the libraries listed below
Sorting:
- ☆19Updated 7 years ago
- simplified cellranger for long-read data☆19Updated 4 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- ☆36Updated 6 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆42Updated 4 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 10 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated last year
- Toolkit for benchmarking fusion transcript predictions☆19Updated last week
- Long read to rMATS☆32Updated 2 years ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆22Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 4 months ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated 9 months ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- A collection of tools to deal with Bisulfite-seq/NOMe-seq (SNP/Methylation calling: BisSNP; HMM segmentation: DMNTools; Visualization/Clu…☆32Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- DNA copy number detection from off-target sequence data☆32Updated 7 years ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- ☆13Updated 8 years ago
- Python package to annotate and visualize gene fusions.☆65Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 3 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago