ChrisMaherLab / INTEGRATE-Vis
☆15Updated last year
Alternatives and similar repositories for INTEGRATE-Vis:
Users that are interested in INTEGRATE-Vis are comparing it to the libraries listed below
- Toolkit for benchmarking fusion transcript predictions☆18Updated 6 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- ☆19Updated 7 years ago
- ☆34Updated 5 years ago
- ☆13Updated 8 months ago
- ☆8Updated 6 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆20Updated 4 years ago
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- RNA Fusion Detection and Quantification☆17Updated 6 years ago
- A tool for sample swap identification in high throughput sequencing studies☆10Updated last week
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated 5 months ago
- ☆21Updated 2 months ago
- Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.☆17Updated last week
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 6 months ago
- FusionAnnotator source code☆14Updated last year
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆16Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated last year
- Copy Number Variation Detection In Next-generation sequencing Gene panels was designed for small (single-exon) copy number variation (CNV…☆21Updated 4 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- Optimizing Cancer Mutation Signatures Jointly with Sampling Likelihood☆10Updated 2 years ago
- Plot CNV data with a genome viewer in R☆15Updated 7 years ago
- RNA-seq workflow: differential transcript usage☆20Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆10Updated 3 years ago
- DriverPower☆26Updated last month