ChrisMaherLab / INTEGRATE-VisLinks
☆15Updated 2 years ago
Alternatives and similar repositories for INTEGRATE-Vis
Users that are interested in INTEGRATE-Vis are comparing it to the libraries listed below
Sorting:
- ☆19Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 5 years ago
- ☆36Updated 6 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated last year
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆20Updated last month
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 weeks ago
- An R package for predicting HR deficiency from mutation contexts☆29Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆18Updated 5 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Updated 9 months ago
- ☆14Updated 3 months ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- A curated list of awesome clonality and tumor heterogeneity resources☆15Updated 6 years ago
- simplified cellranger for long-read data☆19Updated 3 weeks ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆12Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆38Updated last year
- Gene Fusion Visualiser☆51Updated 2 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago