ChrisMaherLab / INTEGRATE-VisLinks
☆15Updated 2 years ago
Alternatives and similar repositories for INTEGRATE-Vis
Users that are interested in INTEGRATE-Vis are comparing it to the libraries listed below
Sorting:
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- ☆19Updated 7 years ago
- Texomer: Integrating Analysis of Cancer Genome and Transcriptome Sequencing Data☆21Updated 4 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆18Updated last year
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 7 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- ☆13Updated last month
- Workflow for Sequenza, cellularity and ploidy☆19Updated last month
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- ☆36Updated 5 years ago
- Toolkit for benchmarking fusion transcript predictions☆19Updated 10 months ago
- All-FIT - Allele-Frequency-based Imputation of Tumor Purity☆17Updated 5 years ago
- Multi-sample cancer phylogeny reconstruction☆35Updated 7 years ago
- ☆22Updated 5 months ago
- ☆23Updated 4 years ago
- ☆21Updated this week
- ☆21Updated 4 years ago
- HiCnv is used to call copy number variations and breakpoints from Hi-C data☆21Updated last year
- The R package "sarlacc" contains a pipeline to analyse nanopore sequencing data. It trims adapter sequences, retrieves optional UMI's, cl…☆13Updated 6 years ago
- FusionAnnotator source code☆14Updated last year
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆20Updated last year
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- ☆21Updated this week
- Transcriptome-wide network☆16Updated 5 years ago
- ☆23Updated 7 months ago