iDEP-SDSU / idep
Integrated Differential Expression and Pathway analysis
☆132Updated 3 weeks ago
Alternatives and similar repositories for idep
Users that are interested in idep are comparing it to the libraries listed below
Sorting:
- RNA-Seq analysis workflow☆104Updated 3 years ago
- Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.☆119Updated 4 years ago
- ☆72Updated 3 years ago
- Generate IGV style locus tracks from bigWig files in R☆161Updated 6 months ago
- Check strandedness of RNA-Seq fastq files☆123Updated 2 years ago
- Visualizing transcript structure and annotation using ggplot2☆155Updated 8 months ago
- Updated implementation of the GSEA-P R application for modern R distributions☆96Updated 3 years ago
- A short tutorial on how to use RSEM☆136Updated 5 years ago
- Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data☆164Updated 5 months ago
- R data package for pre-compiled somatic mutations from TCGA cohorts and CCLE☆93Updated 7 months ago
- Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq☆51Updated 5 years ago
- Tutorials on accessing public reference and genomic data☆30Updated 2 months ago
- ☆61Updated last year
- A toolset for profiling alternative splicing events in RNA-Seq data.☆81Updated 3 months ago
- Integrative pathway enrichment analysis of multivariate omics data☆109Updated 9 months ago
- ☆53Updated last week
- Detecting sites of genomic enrichment☆190Updated 2 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.☆190Updated last year
- SEACR: Sparse Enrichment Analysis for CUT&RUN☆109Updated 2 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆112Updated 3 months ago
- ENCODE Uniform processing pipeline for ChIP-seq☆123Updated 5 years ago
- R data package for annotating/converting Gene IDs☆163Updated 2 years ago
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 8 months ago
- Reduce + Visualize Gene Ontology☆27Updated 2 weeks ago
- fork of RSeQC python RNAseq metrics suit of tools☆48Updated 6 years ago
- An R interface to enrichR☆92Updated 3 months ago
- Web application to explore the Sequence Read Archive.☆216Updated last month
- Simplify functional enrichment results☆115Updated 8 months ago
- Create KEGG.db Package☆60Updated 2 years ago