Alternatives and similar repositories for idep

Users that are interested in idep are comparing it to the libraries listed below

• YuLab-SMU / createKEGGdb
  Create KEGG.db Package
  ☆61Updated 2 years ago
• hbctraining / main
  ☆55Updated last week
• bcgsc / mirna
  microRNA profiling pipeline
  ☆79Updated 3 years ago
• zhxiaokang / RASflow
  RNA-Seq analysis workflow
  ☆105Updated 4 years ago
• dzhang32 / ggtranscript
  Visualizing transcript structure and annotation using ggplot2
  ☆160Updated last year
• kevinblighe / E-MTAB-6141
  Data from Lewis, Barnes, Blighe et al., Cell Rep. 2019 Aug 27; 28(9): 2455–2470.e5.
  ☆121Updated 5 years ago
• GSEA-MSigDB / GSEA_R
  Updated implementation of the GSEA-P R application for modern R distributions
  ☆97Updated 3 years ago
• tavareshugo / tutorial_DESeq2_contrasts
  ☆63Updated last year
• ssayols / rrvgo
  Reduce + Visualize Gene Ontology
  ☆33Updated 2 months ago
• hbctraining / DGE_workshop_salmon
  ☆72Updated 3 years ago
• kvittingseerup / IsoformSwitchAnalyzeR
  An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)
  ☆117Updated 8 months ago
• PoisonAlien / trackplot
  Generate IGV style locus tracks from bigWig files in R
  ☆171Updated 11 months ago
• reimandlab / ActivePathways
  Integrative pathway enrichment analysis of multivariate omics data
  ☆114Updated 2 months ago
• al-mcintyre / merip_reanalysis_scripts
  Scripts for paper entitled "Limits in the detection of m6A changes using MeRIP/m6A-seq
  ☆51Updated 5 years ago
• csoneson / ARMOR
  Light-weight Snakemake workflow for preprocessing and statistical analysis of RNA-seq data
  ☆165Updated this week
• snystrom / memes
  An R interface to the MEME Suite
  ☆52Updated 3 months ago
• guigolab / ggsashimi
  Command-line tool for the visualization of splicing events across multiple samples
  ☆130Updated last year
• vastgroup / vast-tools
  A toolset for profiling alternative splicing events in RNA-Seq data.
  ☆82Updated 8 months ago
• jokergoo / simplifyEnrichment
  Simplify functional enrichment results
  ☆118Updated last year
• signalbash / how_are_we_stranded_here
  Check strandedness of RNA-Seq fastq files
  ☆125Updated 3 years ago
• slowkow / snakefiles
  Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
  ☆93Updated 8 years ago
• AAlhendi1707 / countToFPKM
  Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)
  ☆62Updated 4 years ago
• crazyhottommy / pyflow-ATACseq
  ATAC-seq snakemake pipeline
  ☆88Updated 5 years ago
• ivanek / Gviz
  This is the Gviz development repository. Gviz plots data and annotation information along genomic coordinates.
  ☆86Updated 8 months ago
• LiuLabUB / HMMRATAC
  HMMRATAC peak caller for ATAC-seq data
  ☆99Updated 10 months ago
• saketkc / rna-seq-snakemake
  Snakemake based pipeline for RNA-Seq analysis
  ☆31Updated 6 years ago
• stephenturner / annotables
  R data package for annotating/converting Gene IDs
  ☆166Updated 3 months ago
• raerose01 / deconstructSigs
  deconstructSigs
  ☆143Updated 2 years ago
• tidyomics / tidyomics
  Easily install and load packages from the tidyomcis ecosystem
  ☆68Updated last year
• snakemake-workflows / rna-seq-kallisto-sleuth
  A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.
  ☆68Updated 2 months ago