PaperBLAST: find papers about a protein or its homologs
☆52Apr 10, 2026Updated last month
Alternatives and similar repositories for PaperBLAST
Users that are interested in PaperBLAST are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- ☆52Mar 29, 2026Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 7 months ago
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 4 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆20May 11, 2022Updated 4 years ago
- BEAV: Bacterial Element Annotation reVamped☆77Aug 21, 2025Updated 9 months ago
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆70Mar 16, 2026Updated 2 months ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆27Nov 2, 2025Updated 6 months ago
- ☆49Jun 11, 2025Updated 11 months ago
- ☆17May 13, 2025Updated last year
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- Minimal Microbial Consortia creation tools☆13Jan 28, 2022Updated 4 years ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆75Dec 28, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- From annotated genomes to metabolic screening in large scale microbiotas☆73Apr 27, 2026Updated 3 weeks ago
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆12Oct 11, 2022Updated 3 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆19Feb 5, 2022Updated 4 years ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 3 months ago
- A Swiss-Army-Knife for Bioinformaticians☆15May 11, 2026Updated 2 weeks ago
- A platform for targeted annotation of (meta)genomic and (meta)transcriptomic datasets using HMM sets.☆15Apr 4, 2026Updated last month
- MiGA: Microbial Genomes Atlas☆33Updated this week
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆26Dec 4, 2023Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- microbial association network clustering algorithm☆14Dec 14, 2023Updated 2 years ago
- Iterative Gene clUster Analysis, a high-throughput method for gene cluster family identification.☆17Feb 26, 2026Updated 3 months ago
- CAMITAX: Taxon labels for microbial genomes☆31Dec 14, 2023Updated 2 years ago
- DeepECtransformer☆30Oct 20, 2023Updated 2 years ago
- A flexible and modular software suite for domain-based gene neighborhood and protein search, extraction, and clustering.☆29Updated this week
- SMETANA: a tool to analyse interactions in microbial communities☆70May 6, 2025Updated last year
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 6 months ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆24May 7, 2026Updated 2 weeks ago
- GEne Cluster prediction with COnditional random fields.☆84Mar 10, 2026Updated 2 months ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- A nextflow pipeline for performing bacterial RNA-Seq data analysis.☆13Apr 26, 2026Updated last month
- 🧮 🔢 Generate multi-sample k-mer count matrix from WGS☆11Jan 17, 2026Updated 4 months ago
- alignment-free coverage calculation for metagenomic binning >100 times faster☆52May 8, 2026Updated 2 weeks ago
- Locate antiviral defence systems in prokaryotic genomes☆74Oct 22, 2024Updated last year
- ☆14Mar 12, 2026Updated 2 months ago
- Discovery of conserved gene clusters in multiple genomes☆132Jan 16, 2026Updated 4 months ago
- ☆23Feb 7, 2022Updated 4 years ago