morgannprice / PaperBLASTView external linksLinks
PaperBLAST: find papers about a protein or its homologs
☆51Jan 20, 2026Updated 3 weeks ago
Alternatives and similar repositories for PaperBLAST
Users that are interested in PaperBLAST are comparing it to the libraries listed below
Sorting:
- Python package simulating artificial selection on microbial communities☆14Aug 15, 2023Updated 2 years ago
- ☆50Jan 4, 2026Updated last month
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆67Mar 28, 2025Updated 10 months ago
- Accurate and robust inference of microbial growth dynamics from metagenomic sequencing☆19May 11, 2022Updated 3 years ago
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- Database and pipeline for protein structure-guided annotations of ecologically relevant functions at the metagenome scale.☆24Nov 2, 2025Updated 3 months ago
- CREST - Classification Resources for Environmnetal Sequence Tags, is a collection of software and databases for taxonomic classification …☆12Mar 20, 2022Updated 3 years ago
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆41Sep 28, 2025Updated 4 months ago
- Pathway-Guided Pruning Reconstruction of Genome-Scale Metabolic Models☆12Nov 28, 2023Updated 2 years ago
- ☆43Jun 11, 2025Updated 8 months ago
- ☆17May 13, 2025Updated 9 months ago
- BinaRena: Interactive Visualization and Binning of Metagenomic Contigs☆33Aug 22, 2024Updated last year
- BEAV: Bacterial Element Annotation reVamped☆73Aug 21, 2025Updated 5 months ago
- scripts for estimating bacteria replication rates based on population genome copy number variation☆73Dec 28, 2019Updated 6 years ago
- Tools for extracting individual genomes from metagenomes☆16Dec 4, 2023Updated 2 years ago
- SMETANA: a tool to analyse interactions in microbial communities☆66May 6, 2025Updated 9 months ago
- CAMITAX: Taxon labels for microbial genomes☆30Dec 14, 2023Updated 2 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆68Jan 16, 2026Updated 3 weeks ago
- MiGA: Microbial Genomes Atlas☆32Feb 5, 2026Updated last week
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- 📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria☆41Oct 28, 2025Updated 3 months ago
- aweMAGs: a fully automated workflow for eukariotic MAGs☆20Jun 6, 2023Updated 2 years ago
- Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs☆17Feb 5, 2022Updated 4 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- A scalable high-throughput metabolic and biogeochemical functional trait profiler☆218Jan 27, 2025Updated last year
- ☆22Feb 7, 2022Updated 4 years ago
- Python script to upload bins and MAGs to ENA (European Nucleotide Archive)☆25Feb 6, 2026Updated last week
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆95Aug 11, 2025Updated 6 months ago
- Uncover organisms' metabolic blueprints☆13Jun 18, 2024Updated last year
- MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data☆13Jan 28, 2026Updated 2 weeks ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆71Jan 5, 2026Updated last month
- ☆27Dec 20, 2023Updated 2 years ago
- Scripts and libraries for Environmental Genomics☆38Feb 11, 2025Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆39Feb 27, 2024Updated last year
- DAS Tool☆169May 2, 2024Updated last year
- ☆26Jun 20, 2023Updated 2 years ago
- PHANTASM: PHylogenomic ANalyses for the TAxonomy and Systematics of Microbes☆25Dec 4, 2023Updated 2 years ago
- GEne Cluster prediction with COnditional random fields.☆79Jan 24, 2026Updated 2 weeks ago
- Extremely accurate algorithm used to group DNA sequences from microbial communities into operational taxonomic units (proxy for species) …☆14Nov 20, 2018Updated 7 years ago