Alternatives and similar repositories for ddmp:

Users that are interested in ddmp are comparing it to the libraries listed below

• nickloman / poredb
  ☆19Updated 8 years ago
• lmward / MetaPOAP
  the Metagenomic test for Presence Or Absence of Pathways
  ☆13Updated 6 years ago
• zhaoc1 / nanoflow
  Bioinformatics pipeline for nanopore sequencing data
  ☆10Updated 6 years ago
• camillescott / shmlast
  blast, shmlast
  ☆21Updated 4 years ago
• aziele / alfpy
  http://www.combio.pl/alfree
  ☆23Updated 2 years ago
• zorino / kaamer
  kaamer - protein identification based on amino acid kmers
  ☆12Updated last year
• bcthomas / pullseq
  Utility program for extracting sequences from a fasta/fastq file
  ☆36Updated 2 months ago
• biosustain / goodbye-genbank
  A Python package for Biopython that gives feature annotations from GenBank records a new and better life
  ☆14Updated 8 years ago
• phiweger / darkq
  A message queue for genomic surveillance
  ☆20Updated 3 years ago
• BolognaBiocomp / deepsig
  DeepSig - Predictor of signal peptides in proteins based on deep learning
  ☆26Updated last year
• JCVenterInstitute / PanGenomePipeline
  PanGenomePipeline
  ☆15Updated 10 months ago
• kbaseattic / genome_annotation
  The genome annotation service provides automated gene annotation based on the RAST system. This deploys both client and service component…
  ☆10Updated 4 years ago
• peng-ye / MetaPGN
  A pipeline for construction and graphical visualization of annotated pangenome networks.
  ☆17Updated 6 years ago
• fhcrc / taxtastic
  Create and maintain phylogenetic "reference packages" of biological sequences.
  ☆22Updated 2 weeks ago
• linsalrob / genbank_to
  Convert genbank files to a swath of other formats
  ☆16Updated last year
• biocore / wol
  Reference Phylogeny for Bacterial and Archaeal Genomes
  ☆25Updated 2 years ago
• pereiramemo / BiG-MEx
  BiG-MEx implementation as Docker images and R packages
  ☆12Updated 3 years ago
• althonos / pytrimal
  Cython bindings and Python interface to trimAl, a tool for automated alignment trimming. Now with SIMD!
  ☆22Updated this week
• bioforensics / pytaxonkit
  Python bindings for the TaxonKit library
  ☆33Updated 2 months ago
• biocore / Platypus-Conquistador
  Confirming specific taxonomic groups within your samples.
  ☆19Updated 4 years ago
• ncbi / pipelines
  ☆13Updated 6 years ago
• sourmash-bio / databases
  Build sourmash databases for genbank.
  ☆12Updated last year
• abadona / qsimscan
  Automatically exported from code.google.com/p/qsimscan
  ☆13Updated 3 years ago
• EBI-Metagenomics / emg-toolkit
  MGnify API toolkit
  ☆21Updated last month
• petercim / ClusterFinder
  Predicting biosynthetic gene clusters in genomes
  ☆36Updated 11 years ago
• phiweger / uv
  Finding prophage regions in bacterial genomes using brute force
  ☆22Updated 2 years ago
• edgraham / BinSanity
  Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation
  ☆29Updated 3 years ago
• nodrogluap / pokay
  Report salient qPCR primer/probe or immune epitope mismatches info against a set of pathogen isolate genomes
  ☆14Updated last month
• dkoslicki / MetaPalette
  Metagenomic profiling and phylogenetic distances via common kmers
  ☆42Updated 3 years ago
• ekg / viral-assembly
  exploring viral genome assembly with variation graph tools
  ☆19Updated 4 years ago