HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
☆18Oct 3, 2016Updated 9 years ago
Alternatives and similar repositories for MegaGTA
Users that are interested in MegaGTA are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A gene-targeted assembler tool☆19Oct 27, 2017Updated 8 years ago
- De novo genome assembler.☆12Jul 30, 2018Updated 7 years ago
- Translocator: local realignment and global remapping enabling accurate translocation detection using single-molecule sequencing long read…☆12Jan 22, 2020Updated 6 years ago
- Alternative taxonomic consensus algorithms based on the NCBI taxonomy tree☆16May 29, 2024Updated 2 years ago
- Parallel k-mer indexing for biological sequences☆12Dec 14, 2018Updated 7 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SeqOthello supports fast coverage query and containment query.☆12May 8, 2019Updated 7 years ago
- Proteins as words, genomes as documents.☆19Nov 11, 2020Updated 5 years ago
- Metagenomic binning using low-density hashing a support vector machine☆20Oct 2, 2020Updated 5 years ago
- Minhash Index Extended to Knead Kmer Intersection☆11Mar 18, 2020Updated 6 years ago
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- Sequence Bloom Trees with All/Some split☆11Oct 30, 2018Updated 7 years ago
- Ococo: the first online variant and consensus caller. Call genomic consensus directly from an unsorted SAM/BAM stream.☆46Jan 18, 2019Updated 7 years ago
- ancestral reconstruction and likelihood analysis for CRISPR spacer arrays☆11May 7, 2025Updated last year
- Cosmo is a fast, low-memory DNA assembler using a Succinct (variable order) de Bruijn Graph.☆53Mar 12, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Reducing reference bias using multiple population reference genomes☆34May 27, 2024Updated 2 years ago
- MIcrobiomes using Compressive Acceleration☆17Feb 10, 2018Updated 8 years ago
- A Python interface to gb-io, a fast GenBank parser written in Rust.☆24May 21, 2026Updated 2 months ago
- ☆13Nov 28, 2018Updated 7 years ago
- Iterative error correction of long reads☆13Dec 9, 2022Updated 3 years ago
- A fuzzy Bruijn graph approach to long noisy reads assembly☆39Mar 15, 2017Updated 9 years ago
- Johns Hopkins University student-led genomics paper discussion group☆13Apr 19, 2020Updated 6 years ago
- Automatic Generation of Qualitative Color Palettes☆33Jun 22, 2026Updated last month
- Fast in-place radix sort with STL-like API☆48Dec 10, 2016Updated 9 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- nPoRe: n-Polymer Realigner for improved pileup-based variant calling☆19Jul 11, 2022Updated 4 years ago
- A tool to detect structural variant☆17Mar 27, 2023Updated 3 years ago
- An MPI Toolkit for large-scale genomic analysis☆16Feb 29, 2016Updated 10 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆15Nov 3, 2017Updated 8 years ago
- This repository is deprecated, please use the link to the right.☆23Dec 11, 2018Updated 7 years ago
- Bash script to install gcc-4.9.2 and boost-1.57 on CentOS 5.x, CentOS 6.x and Mac OS X. Languages: c++, c and go. Includes tcmalloc on …☆14May 7, 2016Updated 10 years ago
- Practical Dynamic de Bruijn Graphs☆18Oct 1, 2020Updated 5 years ago
- Pan-genome Seed Index☆20Jul 3, 2026Updated 2 weeks ago
- Building a Chinese pan-genome of 486 individuals☆12Nov 23, 2022Updated 3 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- To tackle the exponentially increasing throughput of Next-Generation Sequencing (NGS), most of the existing short-read aligners can be co…☆31Dec 26, 2023Updated 2 years ago
- KAUST Assembly Read Error Correction Tool☆15Aug 15, 2015Updated 10 years ago
- Alignment algorithm for short Illumina reads to a de Bruijn graph☆17Jun 4, 2019Updated 7 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆17Mar 31, 2022Updated 4 years ago
- CONNET: Accurate Genome Consensus in Assembling Nanopore Sequencing Data via Deep Learning☆11Oct 28, 2022Updated 3 years ago
- A fast constructor of the compressed de Bruijn graph from many genomes☆42Nov 27, 2025Updated 7 months ago
- MIRROR OF: The European Molecular Biology Open Software Suite (from git://anonscm.debian.org/debian-med/emboss.git)☆32Feb 18, 2022Updated 4 years ago