HKU-BAL / MegaGTA
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
☆17Updated 8 years ago
Alternatives and similar repositories for MegaGTA:
Users that are interested in MegaGTA are comparing it to the libraries listed below
- Pan-Genomic Matching Statistics☆50Updated 10 months ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆43Updated 4 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆54Updated last month
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated this week
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Index kmtricks bf matrices☆44Updated 2 months ago
- OPAL: Open-community Profiling Assessment tooL☆28Updated last month
- Remove lambda phage reads from a fastq file☆28Updated 2 years ago
- ☆31Updated 9 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 9 months ago
- Phasing for metagenomics using PacBio long reads☆17Updated 3 years ago
- Split Kmer Analysis☆63Updated 2 years ago
- ☆28Updated last year
- ☆28Updated last year
- Simka and SimkaMin are comparative metagenomics methods dedicated to NGS datasets.☆47Updated 3 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆43Updated 4 years ago
- Find Unique genomic Regions☆29Updated last month
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 6 months ago
- ☆52Updated 3 years ago
- Efficient, parallel compression for terabyte-scale data☆39Updated last month
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 6 years ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Estimate metagenomic coverage and sequence diversity☆48Updated 6 months ago
- PanPhlAn is a strain-level metagenomic profiling tool for identifying the gene composition of individual strains in metagenomic samples☆45Updated last year
- Workflows for metagenomic sequence data processing and analysis.☆17Updated 5 years ago
- Get microbial sequence data easier and faster☆28Updated 5 years ago