HKU-BAL / MegaGTA
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
☆17Updated 8 years ago
Alternatives and similar repositories for MegaGTA:
Users that are interested in MegaGTA are comparing it to the libraries listed below
- Pan-Genomic Matching Statistics☆52Updated 11 months ago
- ☆28Updated last year
- mBin: a methylation-based binning framework for metagenomic SMRT sequencing reads☆25Updated 2 years ago
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 7 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Find Unique genomic Regions☆29Updated this week
- URMAP ultra-fast read mapper☆38Updated 4 years ago
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆56Updated 2 weeks ago
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆44Updated 4 years ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆30Updated 4 years ago
- Efficient, parallel compression for terabyte-scale data☆40Updated 2 months ago
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- Using kallisto for metagenomic analysis☆50Updated 8 years ago
- ☆31Updated 10 months ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆27Updated 10 months ago
- REINDEER REad Index for abuNDancE quERy☆57Updated 8 months ago
- Estimating k-mer coverage histogram of genomics data☆78Updated last year
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆55Updated last year
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- ☆29Updated last year
- ☆52Updated 3 years ago
- MegaPath-Nano: Accurate Compositional Analysis and Drug-level Antimicrobial Resistance Detection Software for Oxford Nanopore Long-read M…☆14Updated 2 years ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆44Updated 4 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated last month
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Minor Variant Calling and Phasing Tools☆15Updated 3 years ago
- CRyPTIC data processing pipelines☆32Updated 8 months ago
- Pipeline to annotate sequences at different taxonomic levels using NCBI's taxonomy☆19Updated 11 years ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆28Updated 10 years ago