HKU-BAL / MegaGTALinks
HMM-guided metagenomic gene-targeted assembler using iterative de Bruijn graphs
☆18Updated 9 years ago
Alternatives and similar repositories for MegaGTA
Users that are interested in MegaGTA are comparing it to the libraries listed below
Sorting:
- A pipeline for detecting mis-assemblies in metagenomic assemblies.☆14Updated 8 years ago
- Pan-Genomic Matching Statistics☆54Updated last year
- REINDEER REad Index for abuNDancE quERy☆56Updated 4 months ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆36Updated 5 years ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Fast and pretty dotplots for whole genomes assemblies using minimap and R/ggplot2☆76Updated 9 years ago
- ✏️ Genome assembly polishing & SNV detection☆71Updated last month
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆68Updated last year
- Partitioning and analysis methods for large, complex sequence datasets☆38Updated 7 years ago
- Estimating k-mer coverage histogram of genomics data☆76Updated last year
- A EXPERIMENTAL fork of minimap2 optimized for assembly-to-reference alignment☆87Updated 4 years ago
- ☆30Updated 2 years ago
- ☆31Updated last year
- A draft genome scaffolder that uses multiple reference genomes in a graph-based approach.☆45Updated 4 years ago
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- A repository for generating strobemers and evalaution☆79Updated last year
- ☆30Updated last year
- URMAP ultra-fast read mapper☆38Updated 5 years ago
- Remove lambda phage reads from a fastq file☆29Updated 2 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- PacBio hybrid error correction through iterative short read consensus☆60Updated 6 years ago
- ♥ Fast and Accurate Estimation of Evolutionary Distances☆29Updated 7 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆75Updated last month
- Scalable long read self-correction and assembly polishing with multiple sequence alignment☆53Updated last year
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Exact Tandem Repeat Finder (not a TRF replacement)☆50Updated 6 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆74Updated 7 months ago
- Index kmtricks bf matrices☆45Updated last month
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- a long-read error correction tool using the multi-string Burrows Wheeler Transform☆45Updated 5 years ago