Retrieve HIVdb algorithm as XML and apply locally to HIV sequences
☆13Feb 9, 2026Updated 2 weeks ago
Alternatives and similar repositories for sierra-local
Users that are interested in sierra-local are comparing it to the libraries listed below
Sorting:
- Sequences from HIV Easily Reconstructed☆28May 3, 2024Updated last year
- HIVDB Genotypic Resistance Interpretation Program☆21Jan 18, 2026Updated last month
- Fast viral consensus genome reconstruction☆25Feb 5, 2026Updated 3 weeks ago
- ☆15May 1, 2025Updated 10 months ago
- ☆22Nov 19, 2025Updated 3 months ago
- ☆14Feb 9, 2026Updated 2 weeks ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Multiplex Primer Design☆12May 3, 2020Updated 5 years ago
- HIVdb webservice client☆12Jan 22, 2026Updated last month
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Jun 4, 2025Updated 8 months ago
- Optimise PCR primer-set grouping for genetics research☆18Updated this week
- Repo for PrimerSchemes☆17Updated this week
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Jan 22, 2026Updated last month
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- Pipeline for processing FASTQ data from an Illumina MiSeq to genotype human RNA viruses like HIV and hepatitis C☆19Updated this week
- An automated assembly pipeline for microbial genomes☆19Jan 15, 2026Updated last month
- Used to trim off the primer sequence from mutiplex amplicon sequencing☆24Dec 20, 2025Updated 2 months ago
- A GPU-accelerated method for ultrarapid pathogen identification from metagenomic sequences.☆28Jun 4, 2024Updated last year
- Influenza genome analysis Nextflow workflow☆31Sep 15, 2025Updated 5 months ago
- Automatically design multiplex PCR primer pairs for diverse templates☆31May 23, 2024Updated last year
- Primer schemes for real-time genome epidemiology☆30Jun 14, 2023Updated 2 years ago
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Jul 2, 2024Updated last year
- Programmatically interact with the GISAID database.☆80Aug 5, 2025Updated 6 months ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Apr 2, 2021Updated 4 years ago
- A repository for the Petagraph project☆14Dec 11, 2025Updated 2 months ago
- ClusterV: finding HIV quasispecies and drug resistance from ONT sequencing data☆12Jan 7, 2025Updated last year
- Particle In Cell code in Julia☆13Oct 14, 2025Updated 4 months ago
- Automated collection of EPO.BIN for Garmin GPS watches; latest download from GitHub in link below.☆10Updated this week
- 🧬 Unique (& conserved) DNA sequence identification☆14Jul 7, 2025Updated 7 months ago
- ☆11Feb 11, 2021Updated 5 years ago
- This repo is archived, the these workflows are still available in the GATK repository under the scripts directory. The workflows are also…☆11Mar 9, 2020Updated 5 years ago
- CGM 主站☆11Mar 10, 2025Updated 11 months ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- A Snakefile to parallelize bwa.☆13Oct 25, 2013Updated 12 years ago
- A Starter Template for SWI-Prolog Projects☆10Jun 1, 2020Updated 5 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆48Feb 3, 2026Updated 3 weeks ago
- Tablet is a lightweight, high-performance graphical viewer for next generation sequence assemblies and alignments.☆42Jun 14, 2023Updated 2 years ago
- ☆14Nov 30, 2017Updated 8 years ago
- XENON: A matriX-based dispErsioN relatiON solver for plasma physics☆15Jun 11, 2023Updated 2 years ago