☆16May 1, 2025Updated last year
Alternatives and similar repositories for PrimerJinn
Users that are interested in PrimerJinn are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatically design multiplex PCR primer pairs for diverse templates☆37May 23, 2024Updated 2 years ago
- Multiplex PCR design, in silico☆24Mar 4, 2025Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆54Mar 23, 2026Updated 4 months ago
- A easy-to-use Python API for Primer3 primer design.☆16Nov 10, 2022Updated 3 years ago
- 🧬 Unique (& conserved) DNA sequence identification☆20Jun 4, 2026Updated 2 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Plasmid annotation pipeline☆17Oct 1, 2025Updated 10 months ago
- Program to quickly and accurately assemble plasmids in hybrid and long-only sequenced bacterial isolates☆89Jul 7, 2026Updated last month
- Pipeline detecting distant and putative novel insertion sequences in prokaryotic genomes☆13Jun 10, 2021Updated 5 years ago
- A program for degenerate primer design for broad taxonomic-range PCR for microbial ecology studies☆32Jun 9, 2023Updated 3 years ago
- Multiplex Primer Design☆13May 3, 2020Updated 6 years ago
- A methodology to rapidly leverage whole genome sequencing of bacterial isolates for clinical identification.☆35Jul 11, 2026Updated 3 weeks ago
- ☆12Feb 14, 2023Updated 3 years ago
- Searching for Horizontal Gene Transfer☆10Feb 22, 2020Updated 6 years ago
- Retrieve HIVdb algorithm as XML and apply locally to HIV sequences☆14Jun 27, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Variant calling pipeline designed for Q20+ ONT long-reads☆15Jan 23, 2026Updated 6 months ago
- DNA overhang misannealing data for Python☆13May 15, 2025Updated last year
- Sorts amplicons from Nanopore sequencing data based on similarity☆45Oct 9, 2025Updated 10 months ago
- A simple script to run an alignment with nucmer and visualise its results.☆10Apr 17, 2023Updated 3 years ago
- a python package for finding tandem repeats from genomic sequences☆38Jun 11, 2026Updated last month
- Snakemake workflow for scoring and comparing multiple bacterial genome assemblies (Illumina, Nanopore) to reference genome(s).☆28May 7, 2026Updated 3 months ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆16Jun 26, 2018Updated 8 years ago
- ☆35Updated this week
- Host depletion optimised for clinical metagenomic sequencing applications☆19Jul 9, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- An open-source data management system for tracking environmental DNA samples and metadata☆15Aug 8, 2024Updated 2 years ago
- JTK -- a regional diploid genome assembler☆26Apr 22, 2026Updated 3 months ago
- kMetaShot is an alignment-free taxonomic classifier based on k-mer/minimizer counting for MAGs☆12Apr 27, 2026Updated 3 months ago
- ISCompare, an opensource program to identify Differentially Located Insertion Sequences☆14Apr 30, 2026Updated 3 months ago
- Development repo for pyani-plus (the next iteration of pyani)☆35Updated this week
- GUI for batch primer design with graphical output for PCR and SNP detection☆17Jun 28, 2026Updated last month
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 2 months ago
- DFAST Quality Control: Taxonomy and completeness check☆18Jun 17, 2026Updated last month
- A reliable gap filling pipeline for draft genomes☆11Sep 17, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- BRICK creates a BRIG-like interactive data visualisation for bacterial genome annotations and comparisons☆22Dec 9, 2025Updated 8 months ago
- a DNA assembly library☆23Aug 13, 2025Updated 11 months ago
- k-mer-based non-Bayesian Taxonomic Classifier☆20May 28, 2026Updated 2 months ago
- A pipeline for bioinformatics analysis of bacterial genomes☆34Jul 17, 2026Updated 3 weeks ago
- Fast and space-efficient taxonomic classification of long reads☆46Jul 16, 2026Updated 3 weeks ago
- Colony counting for CS4641☆18Jul 17, 2020Updated 6 years ago
- Indels are not ideal - quick test for interrupted ORFs in bacterial/microbial genomes☆54May 16, 2023Updated 3 years ago