dzhakparov / GeneSelectR
☆19Updated 11 months ago
Alternatives and similar repositories for GeneSelectR:
Users that are interested in GeneSelectR are comparing it to the libraries listed below
- Analysis and visualization of RNA-Seq results☆29Updated 4 months ago
- ☆23Updated 2 years ago
- Example of run CytoSig and reproduce prediction results on bulk and single-cell cohorts☆12Updated last year
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆17Updated 3 weeks ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- scripts for the integrating ATAC-seq, RNA-seq and CHi-C paper☆24Updated 2 years ago
- ☆20Updated last year
- Collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆16Updated 3 years ago
- A R script to perform clustering of gene expression time-series RNA-seq data with Mfuzz.☆19Updated 6 years ago
- ☆16Updated last year
- Detecting cancer subtypes with machine learning.☆10Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- ☆27Updated 6 months ago
- This repository contains code for the evaluation of epithelial-to-mesenchymal transition states in cancer.☆12Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆14Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated last week
- HTCA Analysis Tools☆5Updated 2 years ago
- cell type deconvolution for multi-condition bulk RNA-seq data☆25Updated 3 years ago
- Code related to scRNA analysis using the scAmpi workflow☆25Updated 5 months ago
- ☆17Updated 2 years ago
- ☆25Updated last year
- Gene Expression Decomposition and Integration☆17Updated 2 months ago
- Analysis pipeline for our circSC manuscript☆13Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆15Updated last year
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- ☆12Updated 3 years ago
- ☆12Updated 4 years ago
- ☆12Updated 5 years ago
- ☆30Updated 3 months ago
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Updated 4 years ago