qm2 / NanoSpringLinks
Compressor for Nanopore Sequencing Reads
☆22Updated 2 years ago
Alternatives and similar repositories for NanoSpring
Users that are interested in NanoSpring are comparing it to the libraries listed below
Sorting:
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated last year
- A C++ library and utilities for manipulating the Graphical Fragment Assembly format.☆55Updated 3 years ago
- ☆34Updated 5 years ago
- Pan-Genomic Matching Statistics☆53Updated last year
- VNTR annotation using motif selection☆36Updated this week
- A versatile compressor of third generation sequencing reads.☆51Updated last year
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆44Updated this week
- MarginPolish: Graph based assembly polishing☆46Updated 4 years ago
- ☆30Updated last year
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆50Updated 5 months ago
- Mumemto: multi-MUM and MEM finding across pangenomes☆109Updated last month
- Banded Striped DNA Sequence Alignment☆47Updated 2 years ago
- Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.☆66Updated last year
- A streaming method for mapping nanopore raw signals☆32Updated 3 years ago
- ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.☆52Updated 2 weeks ago
- Joint structural variant and copy number variant caller for HiFi sequencing data☆59Updated this week
- C implementation of the Landau-Vishkin algorithm☆35Updated 3 years ago
- Dynamic time warping of Oxford Nanopore squiggle data to characterize tandem repeats.☆32Updated 5 years ago
- TideHunter: efficient and sensitive tandem repeat detection from noisy long reads using seed-and-chain☆30Updated last year
- Profile HMM-based hybrid error correction algorithm for long reads☆21Updated 7 years ago
- A simple tool for extracting reads from Oxford Nanopore fast5 files☆26Updated 8 years ago
- Tumour-only somatic mutation calling using long reads☆27Updated 10 months ago
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 9 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆36Updated 3 months ago
- efficient alignment of strings to partially ordered string graphs☆33Updated 3 years ago
- H.E.L.E.N. (Homopolymer Encoded Long-read Error-corrector for Nanopore)☆72Updated 4 years ago
- ☆48Updated last year
- VBZ compression plugin for nanopore signal data☆41Updated 5 months ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆71Updated 6 years ago
- URMAP ultra-fast read mapper☆39Updated 5 years ago