Alternatives and similar repositories for NanoSpring

Users that are interested in NanoSpring are comparing it to the libraries listed below

• refresh-bio / colord
  A versatile compressor of third generation sequencing reads.
  ☆51Updated last year
• oma219 / spumoni
  Pan-Genomic Matching Statistics
  ☆52Updated last year
• vikshiv / mumemto
  Mumemto: multi-MUM and MEM finding across pangenomes
  ☆102Updated last week
• lh3 / miniwfa
  A reimplementation of the WaveFront Alignment algorithm at low memory
  ☆49Updated last year
• dnbaker / dashing2
  Dashing 2 is a fast toolkit for k-mer and minimizer encoding, sketching, comparison, and indexing.
  ☆64Updated last year
• EvolBioInf / phylonium
  ♥ Fast and Accurate Estimation of Evolutionary Distances
  ☆28Updated 3 months ago
• Kirk3gaard / 2023-basecalling-benchmarks
  ☆30Updated last year
• thegenemyers / ONEcode
  1-code framework: docs, C-library, and tools
  ☆21Updated 5 months ago
• MoinSebi / gretl
  Statistics and analysis for variation graphs
  ☆41Updated 7 months ago
• Parsoa / SVDSS
  Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)
  ☆43Updated last month
• ruanjue / bsalign
  Banded Striped DNA Sequence Alignment
  ☆45Updated 2 years ago
• HaploKit / Strainline
  Full-length de novo viral haplotype reconstruction from noisy long reads
  ☆20Updated last year
• iqbal-lab-org / make_prg
  Code to create a PRG from a Multiple Sequence Alignment file
  ☆25Updated 2 weeks ago
• JensUweUlrich / ReadBouncer
  Fast and scalable nanopore adaptive sampling
  ☆34Updated 2 years ago
• ablab / VerityMap
  ☆36Updated 2 years ago
• UCSC-nanopore-cgl / MarginPolish
  MarginPolish: Graph based assembly polishing
  ☆46Updated 4 years ago
• PacificBiosciences / jasmine
  Call select base modifications in PacBio HiFi reads
  ☆8Updated 5 months ago
• benedictpaten / marginPhase
  ☆34Updated 5 years ago
• kage-genotyper / kage
  Alignment-free genotyper for SNPs and short indels, implemented in Python.
  ☆49Updated 4 months ago
• andrewjpage / krocus
  Predict MLST directly from uncorrected long reads
  ☆27Updated 3 years ago
• mrvollger / SafFire
  ☆30Updated 2 months ago
• HaploKit / vechat
  Correcting errors in noisy long reads using variation graphs
  ☆51Updated 2 years ago
• kjenike / panagram
  ☆63Updated last week
• jermp / fulgor
  ⚡️ 🧬 Fulgor is a fast and space-efficient colored de Bruijn graph index.
  ☆51Updated this week
• rrwick / Rebaler
  reference-based long read assemblies of bacterial genomes
  ☆50Updated 3 years ago
• edawson / gfakluge
  A C++ library and utilities for manipulating the Graphical Fragment Assembly format.
  ☆54Updated 3 years ago
• shingocat / lrscaf
  TGS scaffolding
  ☆46Updated 3 years ago
• rchikhi / 2022-pangenome-graphs-intro
  ☆28Updated 9 months ago
• tlemane / kmdiff
  Differential k-mer analysis
  ☆36Updated last year
• micahvista / VACmap
  VACmap: a long-read aligner specifically designed for complex structural variation discovery
  ☆36Updated last week