qm2 / NanoSpring
Compressor for Nanopore Sequencing Reads
☆21Updated last year
Related projects: ⓘ
- A reimplementation of the WaveFront Alignment algorithm at low memory☆49Updated 3 months ago
- Pan-Genomic Matching Statistics☆45Updated 5 months ago
- ☆27Updated 9 months ago
- VNTR annotation using motif selection☆28Updated 3 weeks ago
- Tool for globally phasing diploid assembly graphs with orthogonal data☆36Updated last month
- ☆27Updated this week
- ☆30Updated last year
- Statistics and analysis for variation graphs☆30Updated last month
- MarginPolish: Graph based assembly polishing☆45Updated 3 years ago
- Banded Striped DNA Sequence Alignment☆46Updated last year
- Python bindings to spoa☆18Updated 11 months ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆47Updated last week
- Efficient low-divergence mapping of long reads in minimizer space☆62Updated 11 months ago
- GFAffix identifies walk-preserving shared affixes in variation graphs and collapses them into a non-redundant graph structure.☆33Updated 7 months ago
- Tumour-only somatic mutation calling using long reads☆22Updated 6 months ago
- Identification of transposable element families from pangenome polymorphisms☆38Updated last month
- Differential k-mer analysis☆33Updated 7 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆57Updated last week
- ☆24Updated last month
- Classifier for metagenomic sequences using FM-index with run-block compressed BWT.☆39Updated last month
- Improved structural variant discovery in accurate long reads using sample-specific strings (SFS)☆42Updated 2 months ago
- ☆29Updated 3 weeks ago
- Graphical interactive tool for the visualization of sequence graphs in GFA format.☆63Updated 5 years ago
- ☆12Updated 5 years ago
- A versatile compressor of third generation sequencing reads.☆49Updated 5 months ago
- Predict 5mC in PacBio HiFi reads☆30Updated 11 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 7 months ago
- 1-code framework: docs, C-library, and tools☆14Updated 2 weeks ago
- Fast and scalable nanopore adaptive sampling☆33Updated last year
- Python wrapper for wavefront alignment using WFA2-lib☆35Updated 5 months ago