franciscozorrilla / EMBOMicroComLinks
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
☆13Updated last year
Alternatives and similar repositories for EMBOMicroCom
Users that are interested in EMBOMicroCom are comparing it to the libraries listed below
Sorting:
- ☆42Updated 6 months ago
- Pipeline for major biological analyses.☆36Updated 3 years ago
- From annotated genomes to metabolic screening in large scale microbiotas☆67Updated 7 months ago
- A highly scalable, user-interactive tool for the large scale analysis of Biosynthetic Gene Clusters data☆92Updated 4 months ago
- PHANOTATE: a gene caller for phages.☆79Updated last year
- Predict oxygen, temperature, salinity, and pH preferences of bacteria and archaea from a genome☆61Updated 9 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆51Updated last year
- Providing up-to-date phage genome databases, metrics and useful input files for a number of bioinformatic pipelines.☆75Updated 8 months ago
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated last year
- Bioinformatic Tools for study Evolution of metabolic diversity☆38Updated last year
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆71Updated last month
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆60Updated last year
- ☆17Updated 3 years ago
- MacSyFinder - Detection of macromolecular systems in protein datasets using systems modelling and similarity search.☆70Updated last week
- A package to annotate protein sequences☆60Updated 10 months ago
- The Microbial Co-occurrence Network Explorer☆21Updated 2 years ago
- This repository contains all source code in the reconstructor python package, installation instructions, important file dependencies, and…☆23Updated 3 weeks ago
- ☆45Updated 2 years ago
- metabolic heatmap☆22Updated 6 years ago
- A pipeline to computationally identify invertible DNA regions and quantify their orientations.☆31Updated last year
- ☆21Updated 5 months ago
- PaperBLAST: find papers about a protein or its homologs☆50Updated 3 weeks ago
- PGPg Finder is a command-line tool that offers different workflows for genome and metagenome annotation of Plant-Growth Promotion Genes. …☆27Updated 6 months ago
- ☆81Updated last month
- ☆31Updated last year
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆24Updated 3 months ago
- A listing of software, tools and databases useful for virome analysis☆58Updated this week
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Updated last year
- Woltka: a versatile meta'omic data classifier☆75Updated 3 months ago
- Pipelines used in the lab.☆15Updated 9 months ago