franciscozorrilla / EMBOMicroCom
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
☆11Updated last year
Alternatives and similar repositories for EMBOMicroCom:
Users that are interested in EMBOMicroCom are comparing it to the libraries listed below
- A workflow and scripts for large-scale antiSMASH analyses☆34Updated last month
- ☆38Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 5 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆38Updated last month
- Pipeline for major biological analyses.☆34Updated 2 years ago
- Protocol for finding informative protein families and then using them to score omic samples☆18Updated 2 years ago
- Bioinformatic Tools for study Evolution of metabolic diversity☆31Updated 11 months ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆23Updated this week
- Gupta et al., TaxiBGC: a Taxonomy-guided Approach for Profiling Experimentally Characterized Microbial Biosynthetic Gene Clusters and Sec…☆15Updated last year
- Plot microbiome time series in parallel☆24Updated last year
- The Microbial Co-occurrence Network Explorer☆19Updated last year
- Teaching materials for SymbNET course: from MAGs to GEMs☆13Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆16Updated 3 months ago
- zol (& fai): large-scale targeted detection and evolutionary investigation of gene clusters (i.e. BGCs, phages, etc.)☆52Updated last month
- ☆19Updated 2 years ago
- Pipelines used in the lab.☆11Updated 3 months ago
- ☆44Updated last year
- KEGG Module Evaluation Tool☆28Updated last year
- ☆19Updated 2 years ago
- MAGinator - Accurate SNV calling and profiling of MAGs☆20Updated 3 weeks ago
- metabolic heatmap☆19Updated 5 years ago
- Growth Rate Index (GRiD) measures bacterial growth rate from reference genomes (including draft quality genomes) and metagenomic bins at …☆32Updated 4 years ago
- Bayesian Inferential Regression for Differential Microbiome Analysis☆22Updated last year
- ☆62Updated last month
- ☆16Updated last month
- PlasX, a machine learning classifier for identifying plasmid sequences based on genetic architecture☆32Updated 2 years ago
- Snakemake pipeline calculating KEGG orthologue abundance in metagenomic sequence data.☆24Updated 3 months ago
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆34Updated last week
- scripts for predicting natural product activity from biosynthetic gene cluster sequences☆23Updated last year
- Materials and presentation for the 2023 ISB Microbiome course.☆24Updated 4 months ago