franciscozorrilla / EMBOMicroComLinks
Metabolic modeling tutorial for EMBO practical course: Metabolite and species dynamics in microbial communities 2022
☆13Updated last year
Alternatives and similar repositories for EMBOMicroCom
Users that are interested in EMBOMicroCom are comparing it to the libraries listed below
Sorting:
- ☆38Updated 2 weeks ago
- Teaching materials for SymbNET course: from MAGs to GEMs☆14Updated last year
- Python bindings for the TaxonKit library☆41Updated last month
- The Microbial Co-occurrence Network Explorer☆21Updated last year
- Pipeline for major biological analyses.☆35Updated 3 years ago
- A package to annotate protein sequences☆58Updated 4 months ago
- Chimera: An easy to use pipeline for Genome based Metabolic Network reconstruction, evaluation and visualization.☆18Updated 2 years ago
- Analyses in R and Python Using curatedMetagenomicData☆32Updated 2 months ago
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆50Updated 4 months ago
- Plot microbiome time series in parallel☆26Updated last year
- Pipelines used in the lab.☆12Updated 3 months ago
- the toolbox for Microbial and personalized GEM, REactiobiome and community NEtwork modelling☆11Updated last year
- BiG-MEx implementation as Docker images and R packages☆13Updated 3 years ago
- SMBGC Annotation using Neural Networks Trained on Interpro Signatures☆27Updated 2 months ago
- Rapid discovery of novel prophages using biological feature engineering and machine learning☆37Updated 6 months ago
- Snakemake workflow for the analysis of biosynthetic gene clusters across large collections of genomes (pangenomes)☆42Updated 6 months ago
- A toolkit for prokaryotic comparative genomics☆49Updated 5 months ago
- ☆45Updated 2 years ago
- Metagenome analysis using the Kraken software suite☆32Updated 2 years ago
- KEGG Module Evaluation Tool☆30Updated last year
- gutSMASH☆54Updated 6 months ago
- Universal and efficient core gene phylogeny with Foldseek and ProstT5☆67Updated last week
- Bacterial Annotation by Learned Representation of Genes☆55Updated 4 years ago
- ☆18Updated 4 years ago
- A Python package for discovery, annotation, and analysis of gene clusters in genomics or metagenomics data sets.☆21Updated 3 years ago
- A Reference Pathways Mapper for turning metagenomic functional profiles into pathway/module profiles.☆27Updated 6 years ago
- Metagenomic Estimation of Dietary Intake and Content.☆30Updated 2 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆63Updated 3 months ago
- PaperBLAST: find papers about a protein or its homologs☆39Updated last month
- lsaBGC - Lineage Specific Analysis of Biosynthetic Gene Clusters☆37Updated 2 months ago