Alternatives and similar repositories for EMBOMicroCom

Users that are interested in EMBOMicroCom are comparing it to the libraries listed below

• wbazant / CORRAL

  View on GitHub
  ☆14Oct 14, 2023Updated 2 years ago
• quevan / phlame

  View on GitHub
  ☆12Aug 15, 2025Updated 6 months ago
• SushiLab / omrgc_v2_scripts

  View on GitHub
  ☆11Feb 9, 2024Updated 2 years ago
• raw-lab / DeGenPrime

  View on GitHub
  Primer design from single genes to whole gene families for unlocking the tree of life
  ☆16Jun 4, 2025Updated 8 months ago
• EnvGen / POGENOM

  View on GitHub
  Population genomics from metagenomes
  ☆13Sep 1, 2024Updated last year
• rprops / MetaG_analysis_workflow

  View on GitHub
  ☆14Dec 12, 2017Updated 8 years ago
• mgtools / PhyloMint

  View on GitHub
  Pathway-based and phylogenetically adjusted quantification of competition and cooperation between microbial species
  ☆18Mar 17, 2021Updated 4 years ago
• rotheconrad / KEGGDecoder-binder

  View on GitHub
  metabolic heatmap
  ☆22May 12, 2019Updated 6 years ago
• cjneely10 / EukMetaSanity

  View on GitHub
  Structural and functional annotation of eukaryotic metagenome-assembled genomes
  ☆22May 14, 2023Updated 2 years ago
• jsilve24 / stray

  View on GitHub
  Stray has been renamed fido, development continues at jsilve24/fido
  ☆23Jan 26, 2022Updated 4 years ago
• AlexanderLabWHOI / EukHeist

  View on GitHub
  ☆26Jun 20, 2023Updated 2 years ago
• nick-youngblut / traitar3

  View on GitHub
  From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)
  ☆21Jul 8, 2024Updated last year
• moyn413 / nifHdada2

  View on GitHub
  dada2 formatted nifH database
  ☆13May 17, 2024Updated last year
• RogerLab / Eukfinder

  View on GitHub
  Eukfinder: A pipeline to retrieve microbial eukaryote genomes from metagenomic sequencing data
  ☆28Jan 15, 2026Updated last month
• npbhavya / Kraken2-output-manipulation

  View on GitHub
  Kraken output generates a report for each datasets, this script takes these individual output and combines it to one file, where each col…
  ☆24Jul 26, 2024Updated last year
• AlexanderLabWHOI / EUKulele

  View on GitHub
  Automatic eukaryotic taxonomic classification
  ☆29May 9, 2025Updated 9 months ago
• jcmcnch / eASV-pipeline-for-515Y-926R

  View on GitHub
  This is a collection of scripts for analyzing mixed 16S/18S amplicon sequences using tools such as qiime2, DADA2, deblur, and bbtools
  ☆36Feb 5, 2026Updated last week
• darosacezar / openCrys

  View on GitHub
  Open-Source Software for the Multiscale Modeling of Combined Antisolvent and Cooling Crystallization in Turbulent Flow Using OpenFOAM
  ☆11Nov 4, 2019Updated 6 years ago
• genome-sci / pags_workshop_2019

  View on GitHub
  先進ゲノム支援中級者講習会2019
  ☆10Oct 11, 2019Updated 6 years ago
• MUCDK / genot

  View on GitHub
  GENOT: Generative Neural Optimal Transport
  ☆14Dec 18, 2024Updated last year
• BenoitMorel / AleRax

  View on GitHub
  Gene tree - species tree reconciliation from gene tree distributions
  ☆40Nov 19, 2025Updated 2 months ago
• PlantSynBioLab / AssemblyTron

  View on GitHub
  ☆12Dec 12, 2024Updated last year
• lmigueel / Bioinformatics-scripts

  View on GitHub
  Repository for Bioinformatics scripts and basic programs developed by L.M.C
  ☆10Jun 2, 2023Updated 2 years ago
• everest-castaneda / knext

  View on GitHub
  Kyoto Encylopedia of Genes and Genomes (KEGG) NetworkX Topological parser automates downloading, parsing, and converting from a KEGG Mark…
  ☆11May 8, 2024Updated last year
• snandiDS / prokseq-v2.0

  View on GitHub
  ☆12Apr 5, 2022Updated 3 years ago
• broadinstitute / StrainGE

  View on GitHub
  strain-level analysis tools
  ☆39Oct 21, 2024Updated last year
• SysBioChalmers / HGTphyloDetect

  View on GitHub
  HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
  ☆44Feb 11, 2023Updated 3 years ago
• sven10hove / The-publisher-framework

  View on GitHub
  Always wanted to use Notion as your CMS? Well, now you can!
  ☆10Dec 13, 2021Updated 4 years ago
• LewisLabUCSD / MammalianSecretoryRecon

  View on GitHub
  Secretory Pathway Reconstruction for Human, CHO, and Mouse
  ☆12Aug 24, 2021Updated 4 years ago
• kanojikajino / lecture

  View on GitHub
  ☆10Sep 29, 2023Updated 2 years ago
• cklb / pymoskito

  View on GitHub
  Python based modular control simulation kickass toolbox
  ☆11Sep 30, 2025Updated 4 months ago
• leilahsn / FastKnock

  View on GitHub
  ☆10Oct 21, 2023Updated 2 years ago
• nickhir / DGEvistools

  View on GitHub
  Small R package with some functions to visualize DGE results downstream of DESeq2
  ☆12Jul 6, 2023Updated 2 years ago
• raw-lab / mercat2

  View on GitHub
  MerCat2: python code for versatile k-mer counting and diversity estimation for database independent property analysis for metaome data
  ☆13Jan 28, 2026Updated 2 weeks ago
• avaamini / protease_activity_analysis

  View on GitHub
  Python toolkit and package for analyzing enzyme activity data
  ☆10Jun 17, 2022Updated 3 years ago
• naienh / FT-Reactive-Distillation-Pyomo

  View on GitHub
  Building a Fischer–Tropsch reactive distillation simulator using Pyomo
  ☆14Dec 10, 2018Updated 7 years ago
• DiseaseNeuroGenomics / variancePartition

  View on GitHub
  Quantify and interpret divers of variation in multilevel gene expression experiments
  ☆13Jan 26, 2026Updated 3 weeks ago
• paulovbpo / reinforcement_learning_control_nnets_model

  View on GitHub
  My undergraduate final project - Modeling and control of a distillation column using neural networks and reinforcement learning.
  ☆12Apr 28, 2020Updated 5 years ago
• mahan-fcb / DSResSol

  View on GitHub
  DSResSol: A sequence-based solubility predictor created with Dilated Squeeze Excitation Residual Networks
  ☆11May 30, 2024Updated last year