SysBioChalmers / HGTphyloDetectLinks
HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
☆43Updated 2 years ago
Alternatives and similar repositories for HGTphyloDetect
Users that are interested in HGTphyloDetect are comparing it to the libraries listed below
Sorting:
- BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins☆89Updated last year
- Concatenates FASTA formatted files to one "phyml" (PHYLIP) formatted file☆73Updated last year
- An accurate and sensitive bacterial plasmid identification tool based on deep machine-learning of shared k-mers and genomic features.☆49Updated 2 years ago
- ☆74Updated 6 months ago
- post processing of bacterial pangenome gene presence/absence matrices☆63Updated 9 months ago
- Wrapper for the genoPlotR R package. This wrapper makes phylogeny, genbank files and blast comparisons that is needed for the genoPLotR p…☆14Updated 4 years ago
- PhyloFisher is a software package written in Python3 that can be used for the creation, analysis, and visualization of phylogenomic datas…☆34Updated 5 months ago
- TSEBRA: Transcript Selector for BRAKER☆49Updated last month
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆47Updated 5 months ago
- Microbial Populations as Clusters Of Gene Transfer☆45Updated 2 years ago
- Automatic evaluation of HGTs☆30Updated 10 months ago
- STAG: Species Tree from All Genes☆34Updated 7 years ago
- PATO is a R package designed to analyze pangenomes (set of genomes) intra or inter species.☆62Updated 2 years ago
- Synteny Imager☆65Updated last month
- Alignment-based retrieval and concatenation of phylogenetic markers from whole genome sequence (WGS) data☆36Updated last year
- code repo for mobileOG-db☆41Updated last month
- A massively parallel tool for model selection and tree inference on thousands of genes☆50Updated last year
- Nanomotif - a tool for identifying methylated motifs in metagenomic samples☆34Updated 2 weeks ago
- Perl script for simulating PCR reactions. Extract sequences from a query based on primer sequences.☆48Updated 8 months ago
- Mobile Genetic Elements Retrieving Tool☆16Updated 6 months ago
- Detection of pseudogene candidates in bacterial and archaeal genomes.☆52Updated last year
- Prediction of prophages from bacterial genomes☆81Updated 6 months ago
- Horizontal gene transfer (HGT) identification pipeline☆64Updated 2 years ago
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆71Updated 5 years ago
- ☆84Updated last week
- A toolkit for exploring prokaryotic methylation and base modifications in nanopore sequencing☆51Updated last week
- A program for detection of tRNA genes☆75Updated 3 years ago
- Calculate Average Nucleotide Identity (ANI) for prokaryotic genomes☆18Updated 3 years ago
- Implementation of the TreeShrink problem☆52Updated last year
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆69Updated 4 years ago