HGTphyloDetect is a versatile toolbox to identify horizontal gene transfer (HGT) events combined with phylogenetic analysis.
☆45Feb 11, 2023Updated 3 years ago
Alternatives and similar repositories for HGTphyloDetect
Users that are interested in HGTphyloDetect are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Automatic evaluation of HGTs☆32Jan 31, 2025Updated last year
- A pipeline for lightweight screening of Eukaryotic genomes and transcriptomes for recent HGT☆14Aug 26, 2025Updated last year
- HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.☆151Sep 21, 2023Updated 2 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 3 years ago
- Scripts for calculating features and regression of prokaryote OGT☆26Feb 13, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A pipeline to investigate horizontal gene transfer from NGS data☆27Sep 11, 2026Updated last week
- An R package to perform systematic quality checks on comparative genomics analyses☆12Mar 5, 2026Updated 6 months ago
- Script to help assessing the evolutionary history of a TE family☆16Sep 5, 2019Updated 7 years ago
- Workflow for detecting genome-wide horizontal gene transfers☆10May 29, 2018Updated 8 years ago
- ELECTOR: EvaLuator of Error Correction Tools for lOng Reads☆15May 27, 2021Updated 5 years ago
- A novel bioinformatics pipeline for recent horizontal gene transfer detecting.☆12Nov 13, 2018Updated 7 years ago
- Horizontal gene transfer (HGT) identification pipeline☆70May 17, 2023Updated 3 years ago
- Estimating gene family turnover rates by likelihood-based methods☆12Aug 17, 2020Updated 6 years ago
- starfish: a modular toolkit for giant mobile element annotation☆42Dec 12, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A Python package for testing evolutionary hypotheses in genome-wide approaches.☆33Mar 5, 2021Updated 5 years ago
- Three bacterial GWAS methods all rolled into one easy-to-use R package☆22Apr 16, 2024Updated 2 years ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16May 14, 2026Updated 4 months ago
- Altered version of PathoFact to work more conveniently with SLURM and large input files☆14Nov 7, 2024Updated last year
- ☆13Updated this week
- PhySpeTree: an automated pipeline for reconstructing phylogenetic species trees☆14Apr 15, 2024Updated 2 years ago
- From genomes to phenotypes: Traitar3, the microbial trait analyzer (for Python3)☆21Jul 8, 2024Updated 2 years ago
- identify potential non-animal transcripts in animal transcriptomes☆13Nov 11, 2020Updated 5 years ago
- Within-species genome-wide dN/dS estimation from very many genomes☆24Oct 26, 2020Updated 5 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- A comparative genomics workflow using Nextflow, conda, Julia and R☆50Apr 24, 2024Updated 2 years ago
- rhierbaps: R implementation of hierBAPS☆36Feb 23, 2026Updated 6 months ago
- Gennome annotation scripts for the crickets Gryllus bimaculatus and Laupala kohalensis.☆14Feb 28, 2022Updated 4 years ago
- Fungal Validation and Identification Pipeline☆16Sep 10, 2026Updated last week
- Homologizer: phasing gene copies into polyploid subgenomes☆13Feb 3, 2026Updated 7 months ago
- NCBI download and Orthofinder analysis☆13Jun 17, 2022Updated 4 years ago
- A machine learning model for the prediction of optimal growth temperature of microorganisms and enzyme catalytic optima☆67Sep 30, 2020Updated 5 years ago
- Alignment-Free Taxonomic Classification Deep Learning Model☆17Apr 8, 2026Updated 5 months ago
- transposable element typing pipeline☆20Mar 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Beautify the phylogenetic tree using one Excel sheet only☆18Mar 2, 2024Updated 2 years ago
- Analyzer of Gene and Species Trees☆11Aug 8, 2016Updated 10 years ago
- IslandPath standalone software☆38Nov 7, 2023Updated 2 years ago
- emapper-utils: utils for parse emapper result☆10Sep 22, 2020Updated 5 years ago
- scripts used to download and analyze insect assemblies from GenBank☆15Feb 16, 2021Updated 5 years ago
- Horizontal Gene Transfer Detection by Mapping Sequencing Reads☆21Aug 31, 2017Updated 9 years ago
- ☆11Sep 27, 2024Updated last year