Unleash the full power of your k-mers!
☆24Jan 13, 2026Updated last month
Alternatives and similar repositories for KPop
Users that are interested in KPop are comparing it to the libraries listed below
Sorting:
- pangenome from maximal blocks in an MSA☆11Sep 17, 2024Updated last year
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆10Jan 21, 2022Updated 4 years ago
- Taxonomy classification of viral sequences / contigs☆12Jul 15, 2025Updated 7 months ago
- Development repo for pyani-plus (the next iteration of pyani)☆25Feb 25, 2026Updated last week
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Jun 4, 2025Updated 9 months ago
- A software for gap filling in genome assemblies☆10Aug 12, 2022Updated 3 years ago
- Robust individual and aggregate checksums for nucleotide sequences☆17Updated this week
- Repo for PrimerSchemes☆17Feb 24, 2026Updated last week
- VarSkip multiplex PCR designs for SARS-CoV-2 sequencing☆14Jun 14, 2022Updated 3 years ago
- Ultra-rapid detection of viral variants directly from sequencing data☆36Feb 17, 2026Updated 2 weeks ago
- ☆14Oct 14, 2023Updated 2 years ago
- Bifrost graph gene caller.☆98Jan 20, 2026Updated last month
- ☆17May 13, 2025Updated 9 months ago
- ☆69Mar 10, 2024Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆34Dec 4, 2025Updated 3 months ago
- Leviathan: A fast, memory-efficient, and scalable taxonomic and pathway profiler for (pan)genome-resolved metagenomics and metatranscript…☆18Feb 4, 2026Updated last month
- BEAV: Bacterial Element Annotation reVamped☆74Aug 21, 2025Updated 6 months ago
- A tool to measure bacteriophages plaque sizes☆18May 12, 2023Updated 2 years ago
- This is graphanalyzer.py, a script designed to automatically interpret the outputs generated by vConTACT2 when using the INPHARED databas…☆19Nov 29, 2023Updated 2 years ago
- DFAST Quality Control: Taxonomy and completeness check☆18May 7, 2025Updated 9 months ago
- Chimera: A Versatile Metagenomic Classification Tool☆20Feb 1, 2026Updated last month
- ☆18May 13, 2021Updated 4 years ago
- Tool for unsupervised contig binning from viral metagenomes☆17Oct 22, 2021Updated 4 years ago
- Fast and space-efficient taxonomic classification of long reads☆45Aug 25, 2025Updated 6 months ago
- Taxonomic classifier for sequencing reads (bulk and single-cell data, short and long read) using FM-index with run-block compressed BWT.☆86Feb 18, 2026Updated 2 weeks ago
- ViromeQC is a computational tool to benchmark and quantify non-viral contamination in VLP-enrihed viromes. ViromeQC provides an enrichmen…☆20Nov 15, 2022Updated 3 years ago
- MetagenOmic read Re-Assigner and abundance quantifier☆20Jan 31, 2025Updated last year
- PG-SCUnK mesure quality of Pan-Genome Graphs using Single Copy and Universal k-mers☆23Feb 16, 2026Updated 2 weeks ago
- Bayesian inference of ancestral dates on bacterial phylogenetic trees☆95Dec 9, 2025Updated 2 months ago
- viralFlye pipeline☆18Aug 12, 2024Updated last year
- A machine learning-based tool for predicting metabolic modules in incomplete bacterial genomes.☆23Aug 14, 2025Updated 6 months ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and classify microbial organisms within short- or long-read metagenomi…☆62Updated this week
- ☆11Jul 3, 2022Updated 3 years ago
- k-mers and the like☆22Updated this week
- Ensemble binning strategies for combining the output of multiple binning methods.☆22Mar 11, 2023Updated 2 years ago
- software to identify primers that can distinguish genomes☆20Jan 23, 2026Updated last month
- Prediction of virus-host association using protein language models and multiple instance learning☆21Jun 13, 2024Updated last year
- Downstream processing of VAMB binning for Viral Elucidation☆54Jul 3, 2024Updated last year
- Detecting multi-genome synteny using minimizer graph mapping☆103Feb 9, 2026Updated 3 weeks ago