PaoloRibeca / KPopLinks
Unleash the full power of your k-mers!
☆20Updated 5 months ago
Alternatives and similar repositories for KPop
Users that are interested in KPop are comparing it to the libraries listed below
Sorting:
- Masks recombination as detected by ClonalFrameML or Gubbins and draws an SVG☆21Updated 6 years ago
- Fast pairwise transmission inference from single genome and/or metagenomic data☆21Updated last month
- skDER & CiDDER: efficient & high-resolution dereplication of microbial genomes.☆49Updated last month
- A Python implementation of the OrthoANI algorithm for nucleotide identity measurement.☆31Updated last month
- Genome size estimation from long read overlaps☆59Updated this week
- Melon: metagenomic long-read-based taxonomic identification and quantification using marker genes☆36Updated 4 months ago
- RCandy: an R package for visualising homologous recombination events in bacterial genomes☆25Updated 3 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Updated 2 years ago
- Strain-level haplotyping for metagenomes with short or long-reads.☆53Updated 4 months ago
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- An R package identifying horizontal gene co-transfer between bacteria using association analysis and whole-genome sequences☆26Updated 3 years ago
- Plasmid analysis using rearrangement distances☆45Updated 3 months ago
- Genomewide Epistasis Analysis on Bacteria☆14Updated 3 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated 2 weeks ago
- strain-level analysis tools☆39Updated 10 months ago
- Assign genotypes to Salmonella Typhi genomes based on VCF files (mapped to Typhi CT18 reference genome)☆27Updated last month
- viralFlye pipeline☆18Updated last year
- A comprehensive bacterial core gene-set annotation pipeline based on Roary and pairwise ILPs☆30Updated 10 months ago
- Microbial agile accurate SNP Typer☆30Updated last year
- A taxonomic classifier of plasmids☆28Updated 4 years ago
- a tool to filter sites in a FASTA-format whole-genome pseudo-alignment☆60Updated 2 months ago
- Standalone Python re-implementation of the POLCA polisher from MaSuRCA☆38Updated 2 weeks ago
- Primer design from single genes to whole gene families for unlocking the tree of life☆16Updated 2 months ago
- MAGScoT - a MAG scoring and refinement tool☆36Updated 10 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated last year
- Discover and annotate the virome☆49Updated this week
- Comparison pipeline for Prokaryote Protein Coding Gene Predictors☆25Updated last month
- ☆10Updated 2 months ago
- A random forest classifier to identify contigs of plasmid origin in contig and scaffold genomes☆19Updated 2 years ago
- A pipeline for bioinformatics analysis of bacterial genomes☆30Updated this week