Alternatives and similar repositories for galaxy-beta1

Users that are interested in galaxy-beta1 are comparing it to the libraries listed below

• galaxyproject / cargo-port
  cache packages permanently
  ☆15Updated 3 months ago
• galaxyproject / galaxy-lib
  Subset of Galaxy (http://galaxyproject.org/) core code designed to be used as a library.
  ☆12Updated 5 years ago
• fls-bioinformatics-core / galaxy-tools
  FLS Galaxy tools and tool-wrappers for in-house and third-party bioinformatic applications.
  ☆14Updated last year
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated last year
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated last month
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 8 years ago
• galaxyproject / awesome-galaxy
  Awesome resources related to Galaxy project
  ☆11Updated last year
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆29Updated last month
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 5 years ago
• SGBC / galaksio
  An easy-to-use way for running Galaxy workflows.
  ☆20Updated 6 years ago
• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 7 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 9 years ago
• ryanlayer / svv
  Stupid Simple Structural Variant View
  ☆25Updated 9 years ago
• AlistairNWard / vcfPytools
  vcf file manipulation
  ☆22Updated 10 years ago
• bgruening / coding_for_big_data
  X things you should take into consideration if you code for big data analysis
  ☆23Updated 7 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• rioualen / gene-regulation
  Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.
  ☆11Updated 8 years ago
• quinlan-lab / vcf2db
  create a gemini-compatible database from a VCF
  ☆55Updated 5 years ago
• nextflow-io / cwl2nxf
  Import a CWL workflow specification to Nextflow script (experimental)
  ☆27Updated 7 years ago
• usegalaxy-eu / usegalaxy-eu-tools
  List of tools included in https://usegalaxy.eu
  ☆34Updated this week