vcf file manipulation
☆22Jul 9, 2015Updated 10 years ago
Alternatives and similar repositories for vcfPytools
Users that are interested in vcfPytools are comparing it to the libraries listed below
Sorting:
- Tools for producing pseudo-cgh of next-generation sequencing data☆18Sep 5, 2016Updated 9 years ago
- Various scripts and supporting files used in building the Bio-Linux ISO☆11Sep 5, 2017Updated 8 years ago
- variant discovery and annotation using GATK and Ensembl☆17Jun 27, 2013Updated 12 years ago
- Directly create a bigwig file with signal derived from a sorted and indexed bam file.☆11Jul 7, 2017Updated 8 years ago
- A tool for Read Multi-Mapper Resolution☆24Feb 15, 2017Updated 9 years ago
- A simple and performant API for working with many genomic file formats in a consistent fashion☆16Mar 23, 2018Updated 7 years ago
- A configurable de novo assembly pipeline☆29Jun 29, 2016Updated 9 years ago
- Prioritize structural variants based on CADD scores☆29May 7, 2020Updated 5 years ago
- sort genomic data☆36Nov 7, 2025Updated 4 months ago
- BED QC tool (in the making)☆18Aug 19, 2022Updated 3 years ago
- Reference-based compression of SRA data☆37Mar 26, 2013Updated 12 years ago
- Streaming relation (overlap, distance, KNN) of (any number of) sorted genomic interval sets. #golang☆47Jul 12, 2020Updated 5 years ago
- extract SV signal from a BAM☆11Jul 26, 2018Updated 7 years ago
- Code to do data processing and create figures for "The geography of recent genetic ancestry across Europe", http://arxiv.org/abs/1207.381…☆15May 26, 2014Updated 11 years ago
- Utility programs to trim or sort Illumina reads with adapter sequences☆15Jul 23, 2013Updated 12 years ago
- normalize, left-align, trim, validate and clean VCF files☆20Jul 22, 2015Updated 10 years ago
- miscellaneous script-like stuff in go for bioinformatics☆14Nov 4, 2016Updated 9 years ago
- DEPRECATED. Please visit our new repository (cytoscape/cyREST)☆27Jul 11, 2017Updated 8 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- A modular JavaScript viewer for mass spectrometry data☆12May 20, 2022Updated 3 years ago
- conda recipes for genomic data☆84Jul 31, 2021Updated 4 years ago
- Multiplexed Shotgun Genotyping☆11Feb 15, 2022Updated 4 years ago
- A C library for handling bigWig files☆81Jan 17, 2025Updated last year
- R tools to interact with hap.py output☆16Jul 12, 2019Updated 6 years ago
- Stupid Simple Structural Variant View☆25Nov 21, 2016Updated 9 years ago
- Quantitative Allele Specific Analysis of Reads. Joint genotyping & ASE inference for RNA-seq data☆28Feb 4, 2017Updated 9 years ago
- GenoTypes Compressor☆16May 19, 2022Updated 3 years ago
- probability of mendelian error in trios.☆11Jan 27, 2016Updated 10 years ago
- Materials for GCB535 at Penn.☆20Apr 19, 2019Updated 6 years ago
- example ruffus pipeline☆18Sep 30, 2011Updated 14 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Nov 16, 2016Updated 9 years ago
- ☆36Aug 13, 2020Updated 5 years ago
- Interactive map of neural connections in the nematode C. elegans. Online at http://nemanode.org.☆12May 30, 2024Updated last year
- Tools for identifying introgressed archaic sequence.☆12Jun 20, 2017Updated 8 years ago
- Simplify snpEff annotations for interesting cases☆22Feb 18, 2019Updated 7 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Note: tabix and bgzip binaries are now part of the HTSlib project.☆90Aug 3, 2021Updated 4 years ago
- an open-source pipeline for Affymetrix Axiom genotyping workflow on livestock species☆14Jul 22, 2016Updated 9 years ago
- snp.plotter is an R package that creates publishable-quality plots of p-values using single SNP and/or haplotype data.☆20Jan 19, 2024Updated 2 years ago