Novartis / yap

Related projects ⓘ

Alternatives and complementary repositories for yap

• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 5 years ago
• mfiers / Moa
  Lightweight workflows in bioinformatics:
  ☆23Updated 10 years ago
• StanfordBioinformatics / loom
  A tool for running bioinformatics workflows locally or in the cloud.
  ☆29Updated 4 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 5 years ago
• medvedevgroup / varmatch
  robust matching of small variant datasets using flexible scoring schemes
  ☆10Updated 4 years ago
• amplab / smash
  Benchmarking toolkit for variant calling
  ☆47Updated 4 years ago
• lgautier / fastq-and-furious
  Efficient handling of FASTQ files from Python
  ☆50Updated 2 months ago
• Novartis / railroadtracks
  Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.
  ☆14Updated 9 years ago
• blachlylab / mucor
  ☆12Updated 7 years ago
• rabix / rabix
  [Historical] Reproducible Analyses for Bioinformatics
  ☆106Updated 5 years ago
• clintval / genome-browser
  A lightweight Python graphing API for genomic features
  ☆15Updated 2 years ago
• bjpop / rubra
  Infrastructure code to support DNA pipeline
  ☆38Updated 9 years ago
• EliLillyCo / pytest-wdl
  WDL plugin for pytest
  ☆48Updated last year
• nmdp-bioinformatics / flow
  Consensus assembly and variant calling workflow.
  ☆12Updated 9 years ago
• tiagoantao / pygenomics
  A library for next generation genomics in Python 3
  ☆18Updated 6 years ago
• metalhelix / pipette
  variant discovery and annotation using GATK and Ensembl
  ☆17Updated 11 years ago
• dib-lab / screed
  a simple read-only sequence database, designed for short reads
  ☆63Updated 9 months ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆17Updated 5 years ago
• johandahlberg / piper
  A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…
  ☆21Updated 8 years ago
• bcbio / bcbio.variation.recall
  Parallel merging, squaring off and ensemble calling for genomic variants
  ☆20Updated 5 years ago
• daler / hubward
  Manage the visualization of large amounts of other people's [often messy] genomics data
  ☆18Updated 8 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 4 years ago
• mutalyzer / description-extractor
  HGVS variant description extractor
  ☆11Updated 4 years ago
• arq5x / cyvcf
  A fast Python library for VCF files leveraging Cython for speed.
  ☆52Updated 6 years ago
• bmeg / funnel-client
  Trigger the Google Genomics Pipeline API with CWL
  ☆11Updated 7 years ago
• staciawyman / blender
  This BLENDER has been sunsetted
  ☆16Updated last month
• brentp / python-giggle
  python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.
  ☆16Updated 6 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆23Updated 7 years ago
• arq5x / ggd
  ☆43Updated 8 years ago