Novartis / yapLinks
High throughput, pain-free big data pipelines.
☆30Updated 8 years ago
Alternatives and similar repositories for yap
Users that are interested in yap are comparing it to the libraries listed below
Sorting:
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Toil workflows for common genomic pipelines☆33Updated 6 years ago
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- Benchmarking toolkit for variant calling☆48Updated 5 years ago
- Efficient handling of FASTQ files from Python☆51Updated 2 months ago
- WDL plugin for pytest☆48Updated 2 years ago
- Lightweight workflows in bioinformatics:☆24Updated 10 years ago
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- Library for manipulating genomic variants and predicting their effects☆85Updated last year
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Platform for integrating genomic analysis with Jupyter Notebooks.☆44Updated 3 months ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- Reproducible machine learning analysis of gene expression and alternative splicing data☆125Updated 2 years ago
- Quality control methods for human genomic variants.☆62Updated 3 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year
- Run bcbio-nextgen genomic sequencing analyses using isolated containers and virtual machines☆67Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆51Updated 2 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Butler is a framework for running scientific workflows on public and academic clouds.☆69Updated 5 years ago
- Python graph database framework for bioinformatics☆94Updated 3 years ago
- SevenBridges Python Api bindings☆46Updated 8 months ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated 2 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- EpiViz is a scientific information visualization tool for genetic and epigenetic data, used to aid in the exploration and understanding o…☆71Updated 2 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago