Novartis / yapLinks
High throughput, pain-free big data pipelines.
☆30Updated 8 years ago
Alternatives and similar repositories for yap
Users that are interested in yap are comparing it to the libraries listed below
Sorting:
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Efficient handling of FASTQ files from Python☆51Updated last month
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- A library for next generation genomics in Python 3☆18Updated 7 years ago
- [Historical] Reproducible Analyses for Bioinformatics☆106Updated 6 years ago
- Benchmarking toolkit for variant calling☆48Updated 4 years ago
- WDL plugin for pytest☆48Updated 2 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- A workflow assembler for cancer genome analytics and informatics☆19Updated 8 years ago
- A pipelining tool to automate and standardise bioinformatics analyses on cluster environments.☆98Updated 2 years ago
- Lightweight workflows in bioinformatics:☆24Updated 10 years ago
- robust matching of small variant datasets using flexible scoring schemes☆11Updated 5 years ago
- Flexible Integration of Data with Deep LEarning☆50Updated 2 years ago
- ☆12Updated 8 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- A collection of well-known bioinformatics programs.☆25Updated 10 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Quality control methods for human genomic variants.☆62Updated 3 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 12 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 6 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Consensus assembly and variant calling workflow.☆12Updated 10 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 9 years ago
- SevenBridges Python Api bindings☆46Updated 7 months ago
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆16Updated 7 years ago
- a simple read-only sequence database, designed for short reads☆66Updated last year