Novartis / yapLinks
High throughput, pain-free big data pipelines.
☆30Updated 8 years ago
Alternatives and similar repositories for yap
Users that are interested in yap are comparing it to the libraries listed below
Sorting:
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- A catalogue of docker images for NGS data analysis tools☆9Updated 5 years ago
- Railroadtracks is a Python package to handle connected computation steps for DNA and RNA Seq.☆14Updated 9 years ago
- A tool for running bioinformatics workflows locally or in the cloud.☆30Updated 5 years ago
- Consensus assembly and variant calling workflow.☆12Updated 10 years ago
- WDL plugin for pytest☆48Updated last year
- robust matching of small variant datasets using flexible scoring schemes☆10Updated 5 years ago
- Benchmarking toolkit for variant calling☆47Updated 4 years ago
- Efficient handling of FASTQ files from Python☆51Updated last week
- HGVS variant description extractor☆11Updated 4 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 5 months ago
- A workflow assembler for cancer genome analytics and informatics☆19Updated 8 years ago
- pythonic wrapper for libhts (moved to: https://github.com/quinlan-lab/hts-python)☆49Updated 8 years ago
- ☆12Updated 8 years ago
- Lightweight workflows in bioinformatics:☆24Updated 10 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- Basic, no assumptions, multi-pileup☆24Updated 11 years ago
- A fast Python library for VCF files leveraging Cython for speed.☆52Updated 7 years ago
- Snakemake library for bioinformatics programs, with a focus on next-generation sequencing☆22Updated 9 years ago
- Infrastructure code to support DNA pipeline☆38Updated 10 years ago
- Python client for GA4GH htsget protocol☆15Updated 2 years ago
- Efficient base quality score recalibrator for NGS data☆24Updated 9 years ago
- Isaac Genome Alignment Software☆36Updated 10 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- variant discovery and annotation using GATK and Ensembl☆17Updated 11 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- A genomics pipeline build on top of the GATK Queue framework. Main repository: https://github.com/NationalGenomicsInfrastructure/piper (m…☆21Updated 8 years ago