Framework for Metastatic And Clonal History INtegrative Analysis
☆39Mar 5, 2021Updated 5 years ago
Alternatives and similar repositories for machina
Users that are interested in machina are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Testing a neutral evolution model on cancer sequencing data☆10Feb 17, 2021Updated 5 years ago
- Application for inferring subclonal composition and evolution from whole-genome sequencing data.☆114Oct 12, 2022Updated 4 years ago
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆73Sep 29, 2026Updated last month
- SPRUCE: Somatic Phylogeny Reconstruction using Combinatorial Enumeration☆14Jun 6, 2018Updated 8 years ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆73May 23, 2024Updated 2 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Git repo for CONIPHER tree building☆27Oct 22, 2026Updated last week
- ☆86Apr 17, 2025Updated last year
- Dirichlet Process Clustering Pre-Processing Pipeline☆10Feb 20, 2026Updated 8 months ago
- Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data☆68Jun 30, 2026Updated 4 months ago
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- Inferring and visualizing clonal evolution in multi-sample cancer sequencing☆151Sep 9, 2020Updated 6 years ago
- Probabilistic model for inferring clonal population structure from deep NGS sequencing.☆127Aug 19, 2020Updated 6 years ago
- A framework to infer mutational signatures in cancer over time☆57Jul 9, 2019Updated 7 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Creates a target specific exome_full192.coverage.txt file required by MutSig☆21Sep 15, 2021Updated 5 years ago
- The Functional Analysis through Hidden Markov Models Software and Server☆14Nov 6, 2014Updated 11 years ago
- 🦀 Tumor growth simulation in C++/R☆20Jun 22, 2026Updated 4 months ago
- DeCiFer is an algorithm that simultaneously selects mutation multiplicities and clusters SNVs by their corresponding descendant cell frac…☆22May 21, 2024Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆62Jun 7, 2019Updated 7 years ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14May 28, 2019Updated 7 years ago
- dN/dS methods to quantify selection in cancer and somatic evolution☆243Aug 25, 2026Updated 2 months ago
- ☆10Jan 21, 2023Updated 3 years ago
- Battenberg R package for subclonal copynumber estimation☆100May 11, 2026Updated 5 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆12Nov 23, 2023Updated 2 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆45Apr 16, 2021Updated 5 years ago
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆39Nov 14, 2021Updated 4 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Jan 18, 2023Updated 3 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆34Feb 18, 2026Updated 8 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆50Apr 16, 2021Updated 5 years ago
- ☆11Sep 7, 2023Updated 3 years ago
- Clonality inference in multiple tumor samples using phylogeny☆14Sep 12, 2017Updated 9 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆53May 20, 2022Updated 4 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Evolutionary frequency visualization tool of temporal data☆24Jan 25, 2022Updated 4 years ago
- Predicts which missense mutations will drive growth of human cancers☆12Sep 2, 2026Updated last month
- Battenberg algorithm and associated implementation script☆55Oct 21, 2020Updated 6 years ago
- Published at Bioinformatics☆12Jul 4, 2024Updated 2 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- ☆25Mar 3, 2020Updated 6 years ago
- Create timecourse "fish plots" that show changes in the clonal architecture of tumors☆171Jan 28, 2026Updated 9 months ago