caravagnalab / revolverLinks
Tumour stratification by maximum-likelihood repeated evolution from multi-region sequencing data
☆65Updated 2 years ago
Alternatives and similar repositories for revolver
Users that are interested in revolver are comparing it to the libraries listed below
Sorting:
- Lightweight Iterative Gene set Enrichment in R☆57Updated 10 months ago
- ☆41Updated 7 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆42Updated 4 years ago
- Identify and correct invalid gene symbols☆59Updated 9 months ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- An R Package for Geneset Enrichment Workflows☆76Updated this week
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- Reproducible pipeline for "Comprehensive evaluation of cell-type quantification methods for immuno-oncology", Sturm et al. 2019, https://…☆43Updated 5 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Updated 4 years ago
- Preprocessing of single-cell RNA-Seq (deprecated)☆62Updated 6 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 5 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- ☆38Updated 2 years ago
- Mutational signature analysis for low statistics SNV data☆65Updated last year
- ☆59Updated 11 months ago
- Human transcription factor target genes from 6 databases in convenient R format.☆86Updated 6 years ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆90Updated 5 months ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆46Updated 2 years ago
- binned motif enrichment analysis and visualisation☆41Updated last month
- Compendium to "A Systematic Evaluation of Single Cell RNA-Seq Analysis Pipelines"☆54Updated 4 years ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆53Updated 3 weeks ago
- A toolkit for working with ATAC-seq data.☆24Updated last year
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆34Updated 6 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last week
- Wrapper R scripts for performing a weighted-gene co-expression network analysis (WGCNA)☆28Updated 10 years ago