caravagnalab / revolver
REVOLVER - Repeated Evolution in Cancer
☆65Updated 2 years ago
Alternatives and similar repositories for revolver:
Users that are interested in revolver are comparing it to the libraries listed below
- R package containing useful functions for mutational signature analysis☆81Updated this week
- Mutational signature analysis for low statistics SNV data☆63Updated 8 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 10 months ago
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Reactome Pathway Analysis☆40Updated 5 months ago
- GLASS consortium☆39Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆40Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated 2 years ago
- ☆43Updated 6 years ago
- An R package to time somatic mutations☆61Updated 4 years ago
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆68Updated 3 years ago
- Identify and correct invalid gene symbols☆58Updated 5 months ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated last month
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆50Updated this week
- Framework for Metastatic And Clonal History INtegrative Analysis☆36Updated 4 years ago
- ☆33Updated 5 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 8 months ago
- Battenberg R package for subclonal copynumber estimation☆86Updated 2 weeks ago
- Explore the cancer relevance of your gene list☆51Updated last month
- Machine learning algorithm to predict biological pathway relationships based on functional genomics networks☆20Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆70Updated 4 years ago
- R package for bcbio RNA-seq analysis.☆62Updated 7 months ago
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆50Updated 5 months ago