caravagnalab / revolverLinks
REVOLVER - Repeated Evolution in Cancer
☆65Updated 2 years ago
Alternatives and similar repositories for revolver
Users that are interested in revolver are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- R package containing useful functions for mutational signature analysis☆81Updated this week
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 7 years ago
- Reference transcriptome indices build from kallisto for popular organisms☆42Updated last year
- GREAT Analysis - Functional Enrichment on Genomic Regions☆87Updated 2 months ago
- Mutational signature analysis for low statistics SNV data☆63Updated 9 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Bulk-Sequence Single-Cell Gene Expression Deconvolution Pipeline☆45Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆69Updated 3 years ago
- Identify and correct invalid gene symbols☆58Updated 6 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 4 years ago
- Reactome Pathway Analysis☆42Updated last month
- Soon to be deprecated in favor of broadinstitute/warp github repo. Previously: Secondary analysis pipelines☆48Updated 2 months ago
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 9 months ago
- Create a *de novo* alternative splicing database, validate splicing events, and quantify percent spliced-in (Psi) from RNA seq data☆66Updated 5 years ago
- ☆40Updated 7 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- ☆44Updated 6 years ago
- Lightweight Iterative Gene set Enrichment in R☆56Updated 8 months ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 3 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- An R Package for Geneset Enrichment Workflows☆76Updated last week
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆23Updated 6 years ago
- Genomic Identification of Significant Targets in Cancer (GISTIC), version 2☆51Updated 3 years ago
- ☆59Updated 9 months ago
- ☆34Updated 5 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- processes GoT amplicon data and generates a table of metrics☆29Updated 2 years ago
- This package computes informative enrichment and quality measures for ChIP-seq/DNase-seq/FAIRE-seq/MNase-seq data. It can also be used to…☆59Updated 4 years ago