caravagnalab / revolver
REVOLVER - Repeated Evolution in Cancer
☆64Updated last year
Related projects ⓘ
Alternatives and complementary repositories for revolver
- Mutational signature analysis for low statistics SNV data☆63Updated 3 months ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆69Updated 5 months ago
- Public repository containing research code for the TCGA PanCanAtlas Splicing project☆41Updated 3 years ago
- An R package to time somatic mutations☆60Updated 3 years ago
- ☆40Updated 6 years ago
- Filtering of PDX samples for mouse derived reads☆27Updated last year
- R package containing useful functions for mutational signature analysis☆80Updated this week
- Code and additional processed data for manuscript "Tumor and Microenvironment Evolution during Immunotherapy with Nivolumab"; see for man…☆51Updated 6 years ago
- processes GoT amplicon data and generates a table of metrics☆26Updated 2 years ago
- ☆46Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 3 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆29Updated 6 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated last month
- ☆43Updated 6 years ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆42Updated 3 years ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆26Updated 3 months ago
- Reactome Pathway Analysis☆39Updated 3 weeks ago
- R package for bcbio RNA-seq analysis.☆58Updated 2 months ago
- Somatic copy number analysis using WGS paired end wholegenome sequencing☆69Updated 4 years ago
- ☆33Updated 5 years ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆49Updated 3 months ago
- GREAT Analysis - Functional Enrichment on Genomic Regions☆85Updated 3 months ago
- Adaptive Daisy Model to discriminate core-fitness/context-specific essential genes in large scale CRISPR-Cas9 screens☆22Updated 5 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated last month
- This package contains a reference-based function to infer the proportions of a priori known cell subtypes present in a sample representin…☆44Updated last week
- Explore, compare, and evaluate Bioconductor packages related to genomic copy number analysis☆21Updated last year
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated last year
- ☆46Updated 2 years ago
- Battenberg algorithm and associated implementation script☆52Updated 4 years ago
- Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny☆20Updated 4 years ago