McGranahanLab / CONIPHERLinks
Git repo for CONIPHER tree building
☆21Updated 3 months ago
Alternatives and similar repositories for CONIPHER
Users that are interested in CONIPHER are comparing it to the libraries listed below
Sorting:
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- Model-based subclonal deconvolution from bulk sequencing.☆33Updated 6 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- R package for extracting and visualizing mutational patterns in base substitution catalogues☆11Updated last year
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Spatial Computational Inference of MEtastatic Timing (SCIMET)☆14Updated 6 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- ☆36Updated 5 years ago
- A single cell sequencing read simulator.☆33Updated 9 months ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- An Integrated Analysis Pipeline for Unbiased ChIP seq Analysis☆22Updated 9 months ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- mutSignatures R package - updated (dev) version - 2.1.4☆14Updated 2 years ago
- A computational method for inferring the cancer cell fraction of tumour structural variation from whole-genome sequencing data.☆41Updated 3 months ago
- ☆15Updated 3 years ago
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- DriverPower☆26Updated 6 months ago
- SigProfilerPlotting provides a standard tool for displaying all types of mutational signatures as well as all types of mutational pattern…☆48Updated 4 months ago
- OUTRIDER: OUTlier in RNA-seq fInDER is an R-based framework to find aberrantly expressed genes in RNA-seq data☆53Updated this week
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆45Updated 2 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- A framework to infer mutational signatures in cancer over time☆53Updated 6 years ago
- Mutational signature analysis for low statistics SNV data☆63Updated 11 months ago
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago