yuchaojiang / MARATHONView external linksLinks
Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny
☆20Jan 15, 2020Updated 6 years ago
Alternatives and similar repositories for MARATHON
Users that are interested in MARATHON are comparing it to the libraries listed below
Sorting:
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated 11 months ago
- Search for activating regulatory variants in the tumor genome☆14Apr 11, 2025Updated 10 months ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆35Nov 27, 2024Updated last year
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Clonal structure identification through penalizing pairwise differences☆11Nov 25, 2025Updated 2 months ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- ☆38Feb 27, 2020Updated 5 years ago
- Mutational Signature Comprehensive Analysis Toolkit☆15Aug 22, 2025Updated 5 months ago
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆10Sep 29, 2019Updated 6 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆43Nov 13, 2024Updated last year
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆70Aug 22, 2021Updated 4 years ago
- Haplotype-based somatic genome simulator☆10May 19, 2017Updated 8 years ago
- A python package for learning mutational signatures and their multidimensional genomic properties☆15Sep 1, 2020Updated 5 years ago
- The EnsembleVariantCallingPipeline takes files in FASTQ or BAM format and performs SNV and INDEL variant calling from 4 variant callers (…☆14Jul 24, 2025Updated 6 months ago
- Toolkit for single-cell analysis of chromatin accessibility☆12Feb 27, 2020Updated 5 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- R package with netDx software and data for examples☆12Feb 22, 2023Updated 2 years ago
- SV clustering☆31Jul 5, 2021Updated 4 years ago
- Dockstore implementation of CGP core WGS analysis☆30Jun 8, 2020Updated 5 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Nov 6, 2025Updated 3 months ago
- CALDER (Cancer Analysis of Longitudinal Data through Evolutionary Reconstruction) reconstructs evolutionary trees from longitudinal bulk …☆15Nov 28, 2023Updated 2 years ago
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆56Mar 10, 2021Updated 4 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- Easily run WDL workflows on GCP☆14Sep 28, 2021Updated 4 years ago
- ☆14Oct 26, 2017Updated 8 years ago
- ☆16Aug 11, 2021Updated 4 years ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- ☆36Jul 28, 2019Updated 6 years ago
- Battenberg algorithm and associated implementation script☆53Oct 21, 2020Updated 5 years ago
- A utility for merging and genotyping Illumina-style GVCFs.☆33Feb 26, 2019Updated 6 years ago
- hands-on for NGS/SNParray CNV call trainning☆20Jun 13, 2022Updated 3 years ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 6 years ago
- Single-cell COPy number Estimation☆16Dec 11, 2022Updated 3 years ago
- Mutational signature analysis for low statistics SNV data☆64Aug 7, 2024Updated last year
- Data Structures for Bioinformatics - LM Bioinformatics - University of Rome Tor Vergata☆11Dec 11, 2025Updated 2 months ago
- ☆18Jan 30, 2023Updated 3 years ago
- ☆22Feb 5, 2025Updated last year