Integrative pipeline for profiling DNA copy number and inferring tumor phylogeny
☆20Jan 15, 2020Updated 6 years ago
Alternatives and similar repositories for MARATHON
Users that are interested in MARATHON are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A normalization and copy number variation calling procedure for whole exome DNA sequencing data.☆11Sep 29, 2019Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆43Aug 17, 2021Updated 4 years ago
- Toolkit for single-cell analysis of chromatin accessibility☆13Feb 27, 2020Updated 6 years ago
- Subclonal Hierarchy Inference from Somatic Mutations☆21Feb 25, 2025Updated last year
- A comprehensive pipeline to analyze and visualize structural variants☆20Jan 28, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accessing Intra-Tumor Heterogeneity and Tracking Longitudinal and Spatial Clonal Evolutionary History by Next-Generation Sequencing.☆71Aug 22, 2021Updated 4 years ago
- Single-cell COPy number Estimation☆18Dec 11, 2022Updated 3 years ago
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- ☆38Feb 27, 2020Updated 6 years ago
- Dockstore implementation of CGP core WGS analysis☆30Jun 8, 2020Updated 6 years ago
- ☆13Sep 18, 2017Updated 8 years ago
- Clonal structure identification through penalizing pairwise differences☆11May 14, 2026Updated last month
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Apr 17, 2026Updated 2 months ago
- Somatic point mutation caller☆17Jul 8, 2016Updated 10 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Accucopy is a computational method that infers Allele-Specific Copy Number alterations from low-coverage low-purity tumor sequencing data…☆17Mar 6, 2024Updated 2 years ago
- Method to detect exonic CNVs in NGS Gene Targeted Panels☆16Dec 3, 2019Updated 6 years ago
- PAthway Representation and Analysis by Direct Inference on Graphical Models☆46Feb 7, 2018Updated 8 years ago
- Cancer Genome Project Insertion/Deletion detection pipeline based around Pindel☆28May 14, 2025Updated last year
- A utility for merging and genotyping Illumina-style GVCFs.☆34Feb 26, 2019Updated 7 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆39Nov 27, 2024Updated last year
- ☆16Aug 11, 2021Updated 4 years ago
- hands-on for NGS/SNParray CNV call trainning☆19Jun 13, 2022Updated 4 years ago
- Battenberg algorithm and associated implementation script☆54Oct 21, 2020Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Decrypting somatic mutation patterns to reveal the evolution of cancer☆57Mar 10, 2021Updated 5 years ago
- CHISEL -- Copy-number Haplotype Inference in Single-cell by Evolutionary Links☆44Nov 13, 2024Updated last year
- ☆37Jul 28, 2019Updated 6 years ago
- A set of Pyro models and functions to infer CNA from scRNA-seq data☆11Aug 14, 2023Updated 2 years ago
- [source] CELLO - Cancer EvoLution toolbox for LOngitudinal data☆17Aug 24, 2020Updated 5 years ago
- ☆14Oct 26, 2017Updated 8 years ago
- ☆10May 17, 2017Updated 9 years ago
- Transcriptome-wide network☆16Jul 27, 2019Updated 6 years ago
- Integrated copy number variation detection toolset☆26Feb 12, 2020Updated 6 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Haplotype-based somatic genome simulator☆10Apr 20, 2026Updated 2 months ago
- Mutational signature analysis for low statistics SNV data☆66Aug 7, 2024Updated last year
- Mutational Signature Comprehensive Analysis Toolkit☆16Apr 11, 2026Updated 2 months ago
- SV clustering☆31Jul 5, 2021Updated 5 years ago
- ☆24Updated this week
- ☆18Jan 30, 2023Updated 3 years ago
- R function to plot high quality, elegant heatmap using 'ggplot2' graphics . Some of the important features of this package are, colorin…☆11Apr 19, 2016Updated 10 years ago