amf71 / cloneMapLinks
An R package to plot maps of clone distributions in somatic evolution
☆18Updated 2 years ago
Alternatives and similar repositories for cloneMap
Users that are interested in cloneMap are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- ☆48Updated last year
- An R package to time somatic mutations☆65Updated 5 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- ☆53Updated last year
- ☆18Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- scWGCNA☆61Updated 3 years ago
- ☆39Updated 4 months ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated this week
- ☆41Updated 7 years ago
- scRNA-seq cell type identification☆43Updated 6 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 9 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 3 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆18Updated 2 years ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆62Updated 2 months ago
- R package for Flexible dot plots☆29Updated 3 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆31Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆42Updated 2 years ago
- ☆34Updated 6 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆81Updated 3 years ago
- binned motif enrichment analysis and visualisation☆43Updated 2 months ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- ☆30Updated 4 years ago
- Code to run the scHLApers pipeline for personalized single-cell HLA quantification☆17Updated 2 years ago
- ☆30Updated 7 years ago