amf71 / cloneMapLinks
An R package to plot maps of clone distributions in somatic evolution
☆19Updated 2 years ago
Alternatives and similar repositories for cloneMap
Users that are interested in cloneMap are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆44Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- ☆48Updated last year
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- mutation(barcode) caller for 10x single cell data☆44Updated 5 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆48Updated last year
- identifying disease critical cell types and programs from single cell RNAseq☆58Updated 3 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆47Updated 2 years ago
- ☆40Updated 5 months ago
- ROSE: RANK ORDERING OF SUPER-ENHANCERS☆63Updated 2 months ago
- ☆18Updated last year
- ☆53Updated last year
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Homologous recombination deficiency in TCGA PanCancer Atlas☆29Updated 5 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 3 weeks ago
- codes used in the human kidney eQTL(cf) and eQTL(ci) and snATAC-seq data☆19Updated 5 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆32Updated 3 years ago
- ☆41Updated 7 years ago
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆82Updated 3 years ago
- Analytical pipeline developed to anlayze Cut and Run data. Inspired by both Henikoff (SEACR) and Orkin (Cut&RunTools) lab pipelines.☆19Updated 8 months ago
- GLASS consortium☆42Updated 5 years ago
- scWGCNA☆61Updated 3 years ago
- ☆30Updated 7 years ago
- BRIE: Bayesian Regression for Isoform Estimate in Single Cells☆42Updated last year
- R package for Flexible dot plots☆29Updated 3 years ago
- a computational pipeline for the quantification of the Tumor Immune contexture from human RNA-seq data☆18Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆32Updated 10 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆53Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- ☆38Updated 5 years ago