amf71 / cloneMapLinks
An R package to plot maps of clone distributions in somatic evolution
☆17Updated last year
Alternatives and similar repositories for cloneMap
Users that are interested in cloneMap are comparing it to the libraries listed below
Sorting:
- Code accompanying Characterizing genetic intra-tumor heterogeneity across 2,658 human cancer genomes☆43Updated 4 years ago
- ☆47Updated 6 months ago
- An R package to time somatic mutations☆62Updated 4 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- Code accompanying The Evolutionary history of 2,658 cancers☆46Updated 4 years ago
- GLASS consortium☆39Updated 5 years ago
- ☆40Updated 7 years ago
- Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).☆46Updated last year
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆33Updated 4 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- ☆49Updated last year
- ☆30Updated 7 years ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- ☆37Updated last year
- Immune Cell Gene Signatures for Profiling the Microenvironment of Solid Tumours☆27Updated 4 years ago
- CONICS: COpy-Number analysis In single-Cell RNA-Sequencing☆74Updated 2 years ago
- Repository for Cibersortx☆61Updated 4 years ago
- Alleloscope is a method for allele-specific copy number estimation that can be applied to single cell DNA and ATAC sequencing data (separ…☆29Updated 2 years ago
- A suite of population scale analysis tools for single-cell genomics data including implementation of Demuxlet / Freemuxlet methods and au…☆55Updated 4 years ago
- A comprehensive tool for processing, analyzing and visulizing single cell chromatin accessibility sequencing data☆76Updated 5 months ago
- scWGCNA☆61Updated 2 years ago
- ☆55Updated 4 years ago
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆45Updated last year
- Pileup biallelic SNPs from single-cell and bulk RNA-seq data☆79Updated 3 years ago
- identifying disease critical cell types and programs from single cell RNAseq☆57Updated 3 years ago
- scTyper: a comprehensive pipeline for the cell typing analysis of single-cell RNA-seq data☆30Updated 2 years ago
- Code repo for all analysis done for the 'Pan-cancer whole genome comparison of primary and metastatic solid tumors' study.☆17Updated 2 years ago
- ☆22Updated 5 years ago
- Single Cell Analysis of Five'Ends☆50Updated last year