pachterlab / LSCHWCP_2023Links
Identification of viral RdRPs in single-cell RNA sequencing data
☆10Updated this week
Alternatives and similar repositories for LSCHWCP_2023
Users that are interested in LSCHWCP_2023 are comparing it to the libraries listed below
Sorting:
- Cluster-based analysis of CpG methylation☆13Updated last year
- Pipeline for Universal Mapping of ATAC-seq☆25Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆59Updated 7 months ago
- An introduction to various methods/approaches for the analysis of peaks generated from ChIP-seq / CUT&RUN / ATAC-seq☆28Updated 3 months ago
- SCENIC+ analyses☆14Updated last year
- Cellsnake tool main repo☆33Updated last year
- ☆44Updated 8 months ago
- NeoFlow: a proteogenomics pipeline for neoantigen discovery☆23Updated 8 months ago
- Network construction Algorithm☆22Updated 10 months ago
- Tools for Adaptive Immune Receptor Sequence-Based Machine and Deep Learning☆12Updated 2 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Updated 2 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 5 months ago
- Code related to scRNA analysis using the scAmpi workflow☆27Updated last month
- A pipeline to identify pathogenic microorganisms from scRNA-seq raw data.☆27Updated last year
- R package for analysing meaningful differences in the numbers of cell populations from single-cell phenotypic data☆22Updated 11 months ago
- A Snakemake workflow and MrBiomics module for performing genomic region set and gene set enrichment analyses using LOLA, GREAT, GSEApy, p…☆40Updated 2 weeks ago
- Single cell interactive plotting tools☆23Updated 5 years ago
- Single cell Nanopore sequencing data for Genotype and Phenotype☆54Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- Pathway Enrichment-Guided Activity Study of Alternative Splicing (PEGASAS)☆19Updated 3 years ago
- Ressources for Boinformatics Trainings☆9Updated last year
- pTuneos: prioritizing Tumor neoantigen from next-generation sequencing data☆36Updated 3 years ago
- Single-cell dubious embedding detector (scDED): a statistical method for detecting dubious non-linear embeddings☆42Updated 2 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆19Updated 5 months ago
- The Spatial Splicing-derived Neoantigen Identifier Pipeline (SSNIP) allows for the precise characterization of neoantigens derived from c…☆18Updated 3 months ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 3 years ago
- Pipeline to analyze long-read mRNA isoforms and ORF products sequenced in breast cancer using PacBio Single-Molecule technology.☆16Updated 3 years ago
- Comprehensive and scalable differential splicing analyses☆17Updated 4 months ago
- ☆32Updated last year
- Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data☆21Updated last year