Identification of viral RdRPs in single-cell RNA sequencing data
☆15Mar 12, 2026Updated 7 months ago
Alternatives and similar repositories for LSCHWCP_2023
Users that are interested in LSCHWCP_2023 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Database of virus RdRp barcode sequences☆11Sep 11, 2026Updated last month
- Papillomavirus genome annotation tool☆10May 2, 2023Updated 3 years ago
- Examples for gget (https://github.com/pachterlab/gget).☆41Feb 20, 2026Updated 8 months ago
- Computational workflow for virus genome reconstruction☆10Sep 17, 2026Updated last month
- A user-friendly pipeline for viral diversity analysis and characterization.☆16Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- VirusScan Pipeline☆12Feb 7, 2026Updated 8 months ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Deep learning pipeline for segmentation of fluorescent labels in microscopy images☆14Nov 10, 2021Updated 4 years ago
- Database of virus RdRP barcode sequences☆16Jul 5, 2024Updated 2 years ago
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Oct 27, 2026Updated last week
- R Data Exploration for Serratus☆17Mar 29, 2023Updated 3 years ago
- Tool to submit viral sequences to Genbank.☆16May 14, 2026Updated 5 months ago
- A bioinformatics pipeline for viral transcriptome detection and quantification considering splicing.☆24Jul 24, 2023Updated 3 years ago
- A Companion Package for the Book "Data Integration, Manipulation and Visualization of Phylogenetic Trees"☆13Sep 15, 2022Updated 4 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- 🧬 Viral genome reference alignment☆12Jan 26, 2021Updated 5 years ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆61Sep 23, 2025Updated last year
- Standard tools and protocols for MiSeq amplicon sequencing of 16S rRNA genes☆10Nov 14, 2022Updated 3 years ago
- Scripts, HMMs and search databases for identifying and classifying viral RdRp sequences☆16Aug 6, 2026Updated 2 months ago
- VIPER is a user-friendly software for assembling and identifying viral genomes (currently SARS-CoV-2, Dengue, and Influenza), from Illumi…☆10Jun 19, 2024Updated 2 years ago
- Pipeline for designing custom probes against human genes☆24Jan 30, 2026Updated 9 months ago
- Repository for custom module scripts for SMIDA☆14May 19, 2025Updated last year
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- ☆12Dec 22, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- ☆15May 22, 2025Updated last year
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Tool for recognizing genetic codes (incl. multiple genetic codes in phage genomes) and genetic-code-informed annotation of coding regions…☆11Sep 9, 2023Updated 3 years ago
- Spreadsheet template files for 9x9 and 10x10 tube storage boxes for freezing biological samples☆14Apr 18, 2025Updated last year
- Shell bootloader for data science.☆11Updated this week
- Tools to analyze the differences and similarities between CRISPR arrays☆11Dec 17, 2024Updated last year
- flu utilities☆12Feb 1, 2023Updated 3 years ago
- Pipeline to run qiime2 with snakemake☆17Apr 17, 2020Updated 6 years ago
- ☆34Sep 25, 2026Updated last month
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- ☆25Feb 2, 2021Updated 5 years ago
- Fine-tuning Boltz-1 for domain knowledge adaption☆27Apr 29, 2025Updated last year
- Inferring gene co-expression networks from single cell gene expression data☆29Aug 5, 2022Updated 4 years ago
- Simulation and inference of gene regulatory networks based on transcriptional bursting☆13Apr 17, 2026Updated 6 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆11Mar 2, 2023Updated 3 years ago
- Lightweight GPU-accelerated spatial operations for spatial omics, with CUDA kernels and Python APIs for point-in-polygon queries, overlap…☆14Oct 27, 2026Updated last week
- Pipeline for metagenomic community analysis using DNA isolated from virus-like particles☆13Mar 21, 2020Updated 6 years ago