This repository contains the scripts for reproducing the results presented in Costa AC, Ahamed T, Jordan D, Stephens GJ (2023) "A Markovian dynamics for C. elegans behavior across scales" https://arxiv.org/abs/2310.12883
☆11Sep 25, 2025Updated 5 months ago
Alternatives and similar repositories for markov_worm
Users that are interested in markov_worm are comparing it to the libraries listed below
Sorting:
- Code for reproducing the results of the preprint Maximally Predictive Ensemble Dynamics from Data (2021)☆16Sep 25, 2025Updated 5 months ago
- Modeling Latent Flow Structure using Hodge Decomposition☆16Mar 13, 2025Updated 11 months ago
- ☆32May 30, 2025Updated 9 months ago
- A multiphase field model based on machine learning method☆49Feb 10, 2022Updated 4 years ago
- Neural network compatible DDEs☆13Apr 8, 2025Updated 11 months ago
- Projection operator method for statistical data analysis☆10Mar 11, 2025Updated 11 months ago
- An open-source UNet-based pipeline for nuclei segmentation in histopathology images using the PanNuke dataset. It features an interactive…☆10Jan 9, 2025Updated last year
- Vasculature blood flow computation and impact of astrocytic endfeet on vessels☆11Feb 26, 2025Updated last year
- A flexible pipeline for analyzing zebrafish locomotion☆12May 28, 2025Updated 9 months ago
- ☆13Nov 5, 2019Updated 6 years ago
- Jupyter notebook templates for processing and analyzing neuroscience data.☆14Updated this week
- Code repository for macsGESTALT single cell lineage tracing analysis https://doi.org/10.1101/2020.08.11.245787☆10May 10, 2021Updated 4 years ago
- ☆10Dec 8, 2023Updated 2 years ago
- Dynamic mode decomposition in Python☆13Jun 9, 2015Updated 10 years ago
- ☆13Oct 14, 2021Updated 4 years ago
- Toolkit for Bayesian scaling analysis☆14Sep 8, 2022Updated 3 years ago
- ☆13Aug 6, 2025Updated 7 months ago
- Python package to infer tensions and pressures from 3D microscopy images of embryos and tissues☆12Nov 4, 2025Updated 4 months ago
- Provides links to the OpenMBIR family of software packages☆11Jul 30, 2024Updated last year
- Richard @rdgao & Michael @michaeldeistler: using neural network-based regression and density estimation for Generalized Bayesian Inferenc…☆11Dec 19, 2025Updated 2 months ago
- MATLAB code for Combined Hybrid-Parallel Prediction☆10Nov 14, 2022Updated 3 years ago
- ☆11Mar 30, 2025Updated 11 months ago
- ☆11Jan 23, 2017Updated 9 years ago
- LISBET Is a Social BEhavior Transformer (LISBET)☆12Feb 10, 2026Updated 3 weeks ago
- Dynamical information enables inference of gene regulation at single-cell scale☆12Jun 9, 2025Updated 8 months ago
- A repository for using the distributed information bottleneck to locate information in data☆17Aug 26, 2024Updated last year
- Algorithms for identifying coherent structures in sparse and noisy trajectory datasets☆16Oct 22, 2021Updated 4 years ago
- A Notebook Environment for Safe and Efficient Exploration☆14Jul 16, 2023Updated 2 years ago
- Automated measurement of muscle anatomical cross-sectional area in ultrasound images using deep learning☆18Updated this week
- ROS2 node for access to Basler camera via Pylon CBaslerUniversalInstantCamera API. Supports high-performance, arbitrary framerate, free-r…☆14Aug 28, 2025Updated 6 months ago
- ☆12Apr 13, 2020Updated 5 years ago
- Implementation of the DPD architecture and related experiments for the ACL 2024 paper "Semisupervised Neural Proto-Language Reconstructio…☆11Jul 22, 2024Updated last year
- ScisciJP2024で行ったチュートリアル。過去の論文で取り扱われることの多いトピックを取り上げ、定義、適用、注意点についてまとめ、再現実験のpythonコードを合わせて載せた☆17Jan 27, 2026Updated last month
- Unity Trial Manager for 2D/3D/VR/AR Behavioral Experiment☆16Jun 24, 2024Updated last year
- Neural Crest Fate Decisions☆11Jul 9, 2019Updated 6 years ago
- [ICML 2022] Learning Efficient and Robust Ordinary Differential \\ Equations via Invertible Neural Networks☆10Apr 14, 2023Updated 2 years ago
- Landscape dynamic network biomarkers☆14Sep 21, 2017Updated 8 years ago
- ☆11Oct 11, 2024Updated last year
- QDSpy - a Python software for scripting and presenting stimuli for visual neuroscience.☆11Nov 21, 2025Updated 3 months ago