☆25Oct 16, 2024Updated last year
Alternatives and similar repositories for CPStools
Users that are interested in CPStools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆18Jul 23, 2026Updated 2 weeks ago
- Plastid Genome Annotator☆56Oct 29, 2020Updated 5 years ago
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated 3 months ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆21Jul 26, 2023Updated 3 years ago
- Visualing species tree from ASTRAL with gene tree discordance☆34Jul 3, 2026Updated last month
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- Helper scripts for processing and visualization of phylogenetics datasets☆32Feb 19, 2024Updated 2 years ago
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆29Updated this week
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Jul 17, 2026Updated 3 weeks ago
- Automated de novo assembly of whole chloroplast genomes.☆48Jul 5, 2026Updated last month
- ☆16Apr 11, 2026Updated 4 months ago
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆391Feb 13, 2025Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- An Example of Subgenome Phasing for Complex Allopolyploidy☆17Nov 6, 2025Updated 9 months ago
- ☆22Jan 13, 2026Updated 6 months ago
- ☆19Jul 12, 2026Updated last month
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆63Apr 5, 2018Updated 8 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis☆24Jun 8, 2024Updated 2 years ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆22Jun 23, 2026Updated last month
- A k-mer-based maximum likelihood method for estimating distances of reads to genomes and phylogenetic placement.☆26Jul 18, 2026Updated 3 weeks ago
- VCF2Dis: an ultra-fast and efficient tool to calculate pairwise genetic distance and construct population phylogeny from VCF files☆59Jun 20, 2026Updated last month
- ☆27Jul 26, 2026Updated 2 weeks ago
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆170Nov 4, 2025Updated 9 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆11Oct 6, 2025Updated 10 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆77Jun 4, 2026Updated 2 months ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆180Jun 23, 2026Updated last month
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A bash/biobash library for workflow and pipeline design☆10Jul 2, 2025Updated last year
- ☆29Jul 16, 2022Updated 4 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated 2 years ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated 3 months ago
- Tools for resistance, habitat, and core area mapping☆12Aug 2, 2016Updated 10 years ago
- A shiny application to visualize MCscan result☆37Jun 26, 2026Updated last month
- Comic-Days Public Manga Downloader☆17Dec 8, 2022Updated 3 years ago