☆22Oct 16, 2024Updated last year
Alternatives and similar repositories for CPStools
Users that are interested in CPStools are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- GeneMiner2 is an enhanced version of our previous developments Easy353 and GeneMiner☆16Apr 14, 2026Updated last month
- An Integrative Toolkit for Assembling Plant Mitochondrial Genomes Using HiFi Reads☆27May 8, 2026Updated last month
- Plastid Genome Annotator☆54Oct 29, 2020Updated 5 years ago
- Graph-based Sequence Assembly Toolkit☆24May 7, 2026Updated last month
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆18Jul 26, 2023Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Visualing species tree from ASTRAL with gene tree discordance☆31May 13, 2025Updated last year
- PhyloForge: Unifying micro and macro evolution with comprehensive genomic signals☆10May 17, 2024Updated 2 years ago
- ☆18Apr 28, 2026Updated last month
- Helper scripts for processing and visualization of phylogenetics datasets☆31Feb 19, 2024Updated 2 years ago
- Pipeline for generate Ks plots of transcriptome data.☆12Dec 27, 2017Updated 8 years ago
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- This tool performs an automatic identification, annotation, and analysis of the MYB gene family in plants. It can be applied to new trans…☆21Oct 12, 2025Updated 8 months ago
- ☆16Apr 11, 2026Updated 2 months ago
- A complete telomere-to-telomere assembly of sheep: T2T-sheep1.0☆21Nov 2, 2024Updated last year
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- The tools are used for displaying hic signal of genome☆26Jan 4, 2021Updated 5 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆383Feb 13, 2025Updated last year
- a gap-filling tools of genome in complex region.☆26Dec 30, 2025Updated 5 months ago
- MetMiner: A user-friendly pipeline for large-scale plant metabolomics data analysis☆17Nov 7, 2024Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year
- A statistical framework for ploidy estimation using NGS short-read data☆63Apr 5, 2018Updated 8 years ago
- ggNetView is an R package for network analysis and visualization. It provides flexible and publication-ready tools for exploring complex …☆112Jun 2, 2026Updated last week
- Official code repository for the paper READRetro: Natural Product Biosynthesis Planning with Retrieval-Augmented Dual-View Retrosynthesis☆24Jun 8, 2024Updated 2 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- ☆18Sep 11, 2023Updated 2 years ago
- ☆27Aug 29, 2025Updated 9 months ago
- To phase, partition and visualize subgenomes of a neoallopolyploid or hybrid based on the subgenome-specific repetitive kmers.☆72Jun 4, 2026Updated last week
- WGDI: A user-friendly toolkit for evolutionary analyses of whole-genome duplications and ancestral karyotypes☆166Nov 4, 2025Updated 7 months ago
- ☆25Mar 9, 2026Updated 3 months ago
- an ensemble usage of MAFFT-linsi --add on large datasets☆13May 31, 2024Updated 2 years ago
- ☆29Jul 16, 2022Updated 3 years ago
- A telomere-to-telomere toolkit for gap-free genome assembly and centromeric repeat identification☆174Oct 29, 2025Updated 7 months ago
- Sorting and subsampling phylogenomic datasets☆34Apr 9, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Comic Days public/private manga downloader☆16Sep 9, 2025Updated 9 months ago
- genome annotation (RNAseq and TE) pipeline (draft)☆13Apr 20, 2026Updated last month
- Post-verkko graph and assembly curation in Python.☆19Jun 3, 2026Updated last week
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- R code for writing Beast2 XML (especially morphology/tip-dating)☆11Jun 26, 2024Updated last year
- A shiny application to visualize MCscan result☆37Mar 8, 2026Updated 3 months ago
- various sources and scripts for genomic research software☆10May 11, 2015Updated 11 years ago