daisieh / plannView external linksLinks
Plann: a command-line application for annotating plastome sequences
☆11Aug 5, 2022Updated 3 years ago
Alternatives and similar repositories for plann
Users that are interested in plann are comparing it to the libraries listed below
Sorting:
- Nextflow pipeline for genome annotation of protein-coding genes☆16Dec 21, 2023Updated 2 years ago
- A continually expanding collection of microbiome analysis tools☆18Feb 24, 2022Updated 3 years ago
- Reference-free Binning of Metagenomics Long Reads using Coverage and Composition☆20Sep 10, 2024Updated last year
- Automated de novo assembly of whole chloroplast genomes.☆48Sep 23, 2024Updated last year
- A software suite for accurate identification, annotation, translation, and feature characterization of annotate transcripts.☆22Sep 1, 2021Updated 4 years ago
- ☆20Sep 4, 2024Updated last year
- Find Unique genomic Regions☆32Jan 26, 2026Updated 2 weeks ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Apr 5, 2018Updated 7 years ago
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆195Feb 4, 2024Updated 2 years ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆29Jun 13, 2023Updated 2 years ago
- CAMITAX: Taxon labels for microbial genomes☆30Dec 14, 2023Updated 2 years ago
- Reference-free profiling of polyploid genomes☆141Oct 2, 2025Updated 4 months ago
- A tool for recovering synteny blocks from multiple alignment☆32Oct 18, 2021Updated 4 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆369Feb 13, 2025Updated last year
- sfasta☆35Apr 30, 2025Updated 9 months ago
- An R interface to the omixer-rpm for turning metagenomic functional profiles into pathway/module profiles☆12Dec 16, 2022Updated 3 years ago
- Snakemake workflow to map and quantify microbial genomes in metagenomic reads☆13Oct 10, 2025Updated 4 months ago
- Pipeline for phasing sequence data in polyploids. Designed for target enrichment data, but probably works with other data too.☆12Jun 20, 2024Updated last year
- ☆13Aug 13, 2024Updated last year
- A R tool to parse and visualize chloroplast genomes☆12Dec 1, 2021Updated 4 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆41Jan 22, 2025Updated last year
- Python package and CLI for whole-genome duplication related analyses. **This package is deprecated in favor of** https://github.com/heche…☆86Jan 6, 2026Updated last month
- Identifying transcription factor binding sites from neural network contribution scores☆17Nov 8, 2025Updated 3 months ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 5 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Oct 29, 2020Updated 5 years ago
- BItsliced Genomic Signature Index - Efficient indexing and search in very large collections of WGS data☆10Jun 13, 2023Updated 2 years ago
- ☆41Feb 1, 2026Updated last week
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 3 years ago
- Program for finding horizontal gene transfer using BLAST result☆11May 26, 2023Updated 2 years ago
- ☆10Nov 4, 2021Updated 4 years ago
- Testing hybridization using species trees☆10Aug 25, 2017Updated 8 years ago
- CircRNA testing and ploting R package☆10Nov 23, 2020Updated 5 years ago
- Validation of sycnmers compared to minimizers☆11May 10, 2025Updated 9 months ago
- A Python package for obtaining, parsing and exploring biological taxonomies (GTDB, NCBI, Silva, Greengenes, OTT)☆47Feb 5, 2026Updated last week
- A Python package for obtaining complete lineages and the lowest common ancestor (LCA) from a set of taxonomic identifiers☆52Jan 23, 2026Updated 3 weeks ago
- isoCirc☆10Nov 27, 2023Updated 2 years ago
- Dock Multiple Ligands with AutoDock Vina with one Command☆11Jan 10, 2018Updated 8 years ago
- This is the official site for JASPER (Jellyfish based Assembly Sequence Polisher for Error Reduction)☆12Jun 27, 2024Updated last year
- Package that facilitates pulling database entries from KEGG via its REST API☆11Aug 30, 2023Updated 2 years ago