daisieh / plann
Plann: a command-line application for annotating plastome sequences
☆11Updated 2 years ago
Alternatives and similar repositories for plann:
Users that are interested in plann are comparing it to the libraries listed below
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- MCMCtreeR: A package to estimate distribution values for temporal node constraints and prepare input files for MCMCtree☆45Updated 5 years ago
- ☆32Updated 4 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- Mobile Genetic Elements Retrieving Tool☆15Updated 3 years ago
- EnTAP is moving to GitLab for future changes https://gitlab.com/PlantGenomicsLab/EnTAP☆38Updated last week
- reference-based long read assemblies of bacterial genomes☆47Updated 3 years ago
- BUSCOMP: BUSCO Compiler and Comparison tool☆21Updated 4 months ago
- Adapter trimmer for Oxford Nanopore reads using ab initio method☆39Updated 2 months ago
- ☆52Updated 3 years ago
- use long sequenced reads to close gaps in assemblies☆36Updated 6 years ago
- Detecting multi-genome synteny using minimizer graph mapping☆76Updated 2 weeks ago
- Gapless provides combined scaffolding, gap-closing and assembly correction with long reads☆35Updated last year
- Automated strain separation of low-complexity metagenomes☆51Updated 3 years ago
- Implementation of the TreeShrink problem☆37Updated 4 months ago
- Software that separates very close sequences that have been collapsed during assembly. Uses only long reads.☆34Updated last month
- Improve the quality of a denovo assembly by scaffolding and gap filling☆56Updated 4 years ago
- A tool for evaluating long-read de novo assembly results☆30Updated 5 months ago
- Rapid and simple taxonomic profiling of genome and metagenome contigs☆27Updated last year
- ☆21Updated 10 years ago
- Scripts to estimate genome size and coverage from kmer distribution generated by jellyfish☆56Updated 2 years ago
- Extract metagenome-assembled genomes (MAGs) from metagenomic data using Hi-C.☆23Updated 11 months ago
- Automatic evaluation of HGTs☆26Updated last month
- tools for assessing the accuracy of genome assemblies☆34Updated 9 months ago
- A k-mer based program for the identification of known plasmids from whole-genome sequencing reads☆35Updated 3 years ago
- A tool for evaluate long-read de novo assembly results☆42Updated 5 months ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated last month
- ☆26Updated 3 years ago
- finshingTool☆55Updated 8 years ago
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆37Updated 4 years ago