Alternatives and similar repositories for MITObim:

Users that are interested in MITObim are comparing it to the libraries listed below

• linzhi2013 / MitoZ
  MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes
  ☆120Updated 3 months ago
• tbenavi1 / genomescope2.0
  Reference-free profiling of polyploid genomes
  ☆112Updated 7 months ago
• tpoorten / dotPlotly
  Generate an interactive dot plot from mummer or minimap alignments
  ☆195Updated last year
• RemiAllio / MitoFinder
  MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data
  ☆96Updated 10 months ago
• millanek / Dsuite
  Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species
  ☆166Updated 2 months ago
• ncbi / fcs
  Foreign Contamination Screening caller scripts and documentation
  ☆122Updated 3 months ago
• hahnlab / CAFE5
  Version 5 of the CAFE phylogenetics software
  ☆125Updated last week
• popgenmethods / smcpp
  SMC++ infers population history from whole-genome sequence data.
  ☆159Updated last year
• c-zhou / yahs
  Yet another Hi-C scaffolding tool
  ☆140Updated 3 months ago
• tseemann / nullarbor
  "Reads to report" for public health and clinical microbiology
  ☆138Updated 11 months ago
• qiao-xin / DupGen_finder
  A pipeline used to identify different modes of duplicated gene pairs
  ☆95Updated 4 years ago
• sanger-pathogens / assembly-stats
  Get assembly statistics from FASTA and FASTQ files
  ☆117Updated last year
• xiaochuanle / NECAT
  Nanopore data assembler
  ☆143Updated 2 years ago
• speciationgenomics / scripts
  Scripts for analysis used during the course
  ☆87Updated 9 months ago
• 4ureliek / Parsing-RepeatMasker-Outputs
  Few scripts facilitating the extraction of info from Repeat Masker .out files
  ☆78Updated 3 years ago
• BGI-shenzhen / RectChr
  Multi-level visualization of genomic statistical variables on rectangular chromosomes
  ☆86Updated 3 months ago
• nt246 / lcwgs-guide-tutorial
  ☆82Updated 3 years ago
• jamiemcg / BUSCO_phylogenomics
  BUSCO Phylogenomics | Utility script to construct species phylogenies using BUSCO proteins
  ☆60Updated 4 months ago
• nanoporetech / ont-assembly-polish
  ONT assembly and Illumina polishing pipeline
  ☆91Updated 4 years ago
• rhysf / Synima
  Synteny Imager
  ☆60Updated 5 months ago
• rjchallis / assembly-stats
  Assembly statistic visualisation
  ☆89Updated last year
• steuernb / NLR-Annotator
  NLR-Annotator upload
  ☆63Updated last year
• chenlianfu / geta
  ☆73Updated 7 months ago
• rrwick / Long-read-assembler-comparison
  Benchmarking of long-read assembly tools for bacterial whole genomes
  ☆170Updated 3 years ago
• marcelauliano / MitoHiFi
  Find, circularise and annotate mitogenome from PacBio assemblies
  ☆174Updated last month
• tangerzhang / ALLHiC
  ALLHiC: phasing and scaffolding polyploid genomes based on Hi-C data
  ☆174Updated 4 months ago
• PacificBiosciences / HiFi-16S-workflow
  Nextflow pipeline to analyze PacBio HiFi full-length 16S data
  ☆66Updated last week
• jtlovell / GENESPACE
  ☆198Updated 3 weeks ago
• chasewnelson / SNPGenie
  Program for estimating πN/πS, dN/dS, and other diversity measures from next-generation sequencing data
  ☆111Updated last year
• malonge / RaGOO
  RaGOO is no longer supported. Please use RagTag instead: https://github.com/malonge/RagTag
  ☆172Updated 3 years ago