MITObim - mitochondrial baiting and iterative mapping
☆116Dec 29, 2020Updated 5 years ago
Alternatives and similar repositories for MITObim
Users that are interested in MITObim are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A software to assemble chloroplast and mitochodrial genomes using PacBio data☆40May 21, 2020Updated 6 years ago
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆149Nov 6, 2024Updated last year
- NOVOPlasty - The organelle assembler and heteroplasmy caller☆198Feb 4, 2024Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Mar 29, 2016Updated 10 years ago
- MitoDNA extending assembler from NGS data☆23Mar 19, 2026Updated 4 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Plastid Genome Annotator☆55Oct 29, 2020Updated 5 years ago
- Organelle Genome Assembly Toolkit (Chloroplast/Mitocondrial/ITS)☆390Feb 13, 2025Updated last year
- SMC++ infers population history from whole-genome sequence data.☆177Jan 20, 2024Updated 2 years ago
- Consensus calling (or "reference assisted assembly"), chiefly of ancient mitochondria☆19Jul 29, 2013Updated 12 years ago
- ⛓ Long Interval Nucleotide K-mer Scaffolder☆73Jun 4, 2026Updated last month
- Tools for working with second gen assemblies, fasta sequences, etc☆95Sep 8, 2016Updated 9 years ago
- A simple and fast metassembler and assembly gap filler designed for long molecule based assemblies.☆213Nov 18, 2022Updated 3 years ago
- Scaffolding of genomic assemblies with RNA seq data☆15Oct 8, 2015Updated 10 years ago
- Mitochondrial Genome Assembly☆17Feb 21, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- DFOIL: Introgression Testing for Five Taxa☆33May 15, 2021Updated 5 years ago
- Seeking information like heteroplasmy, structure variants, etc. on Mitochondrial genome from next generation sequencing☆41Dec 11, 2018Updated 7 years ago
- Find, circularise and annotate mitogenome from PacBio assemblies☆199May 11, 2025Updated last year
- ☆48Sep 5, 2023Updated 2 years ago
- a tool to identify species and inter-species hybrids and chromosome copy number variants from short-read data☆19Sep 13, 2019Updated 6 years ago
- An Illumina PE genome contig assembler, can handle large (17Gbp) complex (hexaploid) genomes.☆46Nov 25, 2022Updated 3 years ago
- A mitogenome toolkit inspired by MitoZ, while being more effective, precise and flexible.☆21May 10, 2023Updated 3 years ago
- Converts a VCF file to a FASTA alignment provided a reference genome and a GFF file☆55Dec 15, 2025Updated 7 months ago
- Fast genome analysis from unassembled short reads☆323Apr 8, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- An automated workflow for processing ddRADseq data using Stacks v2.4. Starts with sequencer files, and ends with various input files for …☆10Apr 25, 2024Updated 2 years ago
- Pipelines and tools for the processing of ancient and modern HTS data.☆51Updated this week
- G-PhoCS is a software package for inferring ancestral population sizes, population divergence times, and migration rates from individual …☆34Apr 27, 2021Updated 5 years ago
- Perl script for manipulating multiple sequence alignments for phylogenetic reconstruction☆11Sep 29, 2014Updated 11 years ago
- Redbean: A fuzzy Bruijn graph approach to long noisy reads assembly☆531Sep 27, 2023Updated 2 years ago
- This tool is for users to upgrade their metagenomics assemblies using long reads. This includes fixing mis-assemblies and scaffolding/gap…☆13Mar 17, 2016Updated 10 years ago
- Fast calculation of Patterson's D (ABBA-BABA) and the f4-ratio statistics across many populations/species☆191Dec 19, 2024Updated last year
- Same species annotation lift over pipeline.☆99Jul 21, 2023Updated 2 years ago
- A method to improve mappings on circular genomes, using the BWA mapper☆11Mar 4, 2022Updated 4 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Modular command-line solution for visualisation, quality control and taxonomic partitioning of genome datasets☆214Aug 21, 2024Updated last year
- MitoFinder: efficient automated large-scale extraction of mitogenomic data from high throughput sequencing data☆115Sep 2, 2025Updated 10 months ago
- OrthoFiller: Identifying missing annotations for evolutionarily conserved genes.☆22Dec 1, 2022Updated 3 years ago
- Reproducible Phylogenomics☆22Jun 28, 2016Updated 10 years ago
- Accurate Species TRee ALgorithm☆280Apr 1, 2024Updated 2 years ago
- The MARVEL assembler☆80Jul 7, 2023Updated 3 years ago
- mapDamage: tracking and quantifying damage patterns in ancient DNA sequences☆51Jul 14, 2025Updated last year