asdcid / Chloroplast-genome-assemblyLinks
A pipeline for assemble chroloplast genome using short/long reads
☆10Updated 3 years ago
Alternatives and similar repositories for Chloroplast-genome-assembly
Users that are interested in Chloroplast-genome-assembly are comparing it to the libraries listed below
Sorting:
- Yet another Hi-C scaffolding tool☆22Updated last year
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated last year
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆30Updated 3 years ago
- Genome Annotation Pipeline☆39Updated last year
- issues for semina "Data Visulization"☆13Updated 4 months ago
- ☆33Updated 4 years ago
- scripts for sequence and feature conversion, annotation, analysis ...☆28Updated 7 months ago
- An R package to identify and classify duplicated genes from whole-genome protein sequence data☆28Updated last month
- Plant genome assembly and annotation pipeline using snakemake☆48Updated 5 months ago
- ☆29Updated 2 years ago
- ☆29Updated last year
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…☆22Updated last week
- Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…☆18Updated 5 months ago
- Pipeline for eukaryotic genome annotation based on external evidences☆13Updated 2 years ago
- A genome assembly assessment pipeline.☆37Updated last year
- scripts to parse and analyse MCScanX collinearity output☆32Updated 5 years ago
- A shiny application to visualize MCscan result☆37Updated 3 years ago
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 4 years ago
- Methods and recipes for Plant Genome Annotation - Transposable Elements☆20Updated 4 months ago
- scripts for the project of seven thaliana genomes assembly☆41Updated 4 years ago
- Genome alignment and synteny plots☆32Updated 2 years ago
- ☆28Updated 3 years ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph☆17Updated 2 years ago
- Easily construct the ML species tree with single-copy gene shared by different species.☆27Updated 7 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆44Updated this week
- genome annotation (RNAseq and TE) pipeline (draft)☆12Updated 2 months ago
- Chromosome-level synteny plotting using orthologous regions☆30Updated last year
- ☆31Updated 5 years ago
- Scripts that used in our chicken T2T manuscript.☆22Updated 2 years ago