asdcid / Chloroplast-genome-assembly
A pipeline for assemble chroloplast genome using short/long reads
☆9Updated 2 years ago
Alternatives and similar repositories for Chloroplast-genome-assembly:
Users that are interested in Chloroplast-genome-assembly are comparing it to the libraries listed below
- scripts for sequence and feature conversion, annotation, analysis ...☆27Updated 10 months ago
- methods for orphan gene prediction paper optimization☆25Updated 3 years ago
- scripts for the project of seven thaliana genomes assembly☆38Updated 3 years ago
- ☆32Updated 4 years ago
- ☆24Updated last week
- The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".☆28Updated 3 years ago
- A shiny application to visualize MCscan result☆35Updated 2 years ago
- Yet another Hi-C scaffolding tool☆19Updated 4 months ago
- A genome assembly assessment pipeline.☆37Updated last year
- ☆30Updated 5 years ago
- calling SVs from Blasr contig level alignments☆54Updated 6 years ago
- Pan-genome Construction and Population Structure Variation Calling pipeline☆37Updated 5 months ago
- Python script calculating transposable element density for all genes in a genome. Publication: https://mobilednajournal.biomedcentral.com…☆30Updated 5 months ago
- A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes☆30Updated 10 months ago
- Genome Annotation Pipeline☆35Updated 6 months ago
- We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …☆25Updated 3 years ago
- Data analysis of Funannotate and Orthofinder outputs to Pangenome results☆19Updated 4 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆18Updated 11 months ago
- PlantTribes is a collection of automated gene family analysis pipelines for comparative plant genomics☆35Updated last year
- Dynamic Elongation of a Genome Assembly Path☆21Updated 9 months ago
- Mabs, a genome assembly tool which optimizes parameters of Hifiasm and Flye☆30Updated 2 months ago
- A pipeline for scaffolding a genome assembly using Hi-C☆12Updated 2 years ago
- A tool for the recovery of unassembled telomeres from soft-clipped read alignments.☆35Updated 2 months ago
- STAG: Species Tree from All Genes☆33Updated 6 years ago
- ☆20Updated 6 months ago
- ☆29Updated 2 months ago
- ☆27Updated 2 years ago
- Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files☆20Updated last year
- ☆23Updated last year