Alternatives and similar repositories for Chloroplast-genome-assembly

Users that are interested in Chloroplast-genome-assembly are comparing it to the libraries listed below

• sanger-tol / yahs
  Yet another Hi-C scaffolding tool
  ☆22Updated last year
• cfarkas / annotate_my_genomes
  A genome annotation pipeline that use short and long sequencing reads alignments from animal genomes
  ☆30Updated last year
• jmsong2 / GenomeSyn
  We developed GenomeSyn as a new tool for constructing and visualizing genome synteny, its novel design and implementation can serve as a …
  ☆30Updated 3 years ago
• Yandell-Lab / maker
  Genome Annotation Pipeline
  ☆39Updated last year
• comery / gVisualization
  issues for semina "Data Visulization"
  ☆13Updated 4 months ago
• HuffordLab / GenomeQC
  ☆33Updated 4 years ago
• thackl / seq-scripts
  scripts for sequence and feature conversion, annotation, analysis ...
  ☆28Updated 7 months ago
• almeidasilvaf / doubletrouble
  An R package to identify and classify duplicated genes from whole-genome protein sequence data
  ☆28Updated last month
• baozg / assembly-annotation-pipeline
  Plant genome assembly and annotation pipeline using snakemake
  ☆48Updated 5 months ago
• LAILAB-CAU / update-Mo17
  ☆29Updated 2 years ago
• i10labtitech / GINGER
  ☆29Updated last year
• raymondkiu / bioinformatics-tools
  Small and simple scripts useful for various bioinformatics purposes e.g. extract sequences from fasta files, rename fasta files (prefix a…
  ☆22Updated last week
• StevenVB12 / Tutorial_pan_genomics
  Guide through code for a Minimmap2 genome alignment and a seq-seq-pan pan-genome alignment with visualizations in R. The tutorial present…
  ☆18Updated 5 months ago
• galikbence / genome_annotation
  Pipeline for eukaryotic genome annotation based on external evidences
  ☆13Updated 2 years ago
• zy-optimistic / GAEP
  A genome assembly assessment pipeline.
  ☆37Updated last year
• reubwn / collinearity
  scripts to parse and analyse MCScanX collinearity output
  ☆32Updated 5 years ago
• obenno / ShinySyn
  A shiny application to visualize MCscan result
  ☆37Updated 3 years ago
• qiao-xin / Scripts_for_GB
  The code used in the manuscript titled "Gene duplication and evolution in recurring polyploidization-diploidization cycles in plants".
  ☆28Updated 4 years ago
• amvarani / Plant_Annotation_TEs
  Methods and recipes for Plant Genome Annotation - Transposable Elements
  ☆20Updated 4 months ago
• schneebergerlab / AMPRIL-genomes
  scripts for the project of seven thaliana genomes assembly
  ☆41Updated 4 years ago
• simonhmartin / asynt
  Genome alignment and synteny plots
  ☆32Updated 2 years ago
• lardo / khaper
  ☆28Updated 3 years ago
• eswlab / orphan-prediction
  methods for orphan gene prediction paper optimization
  ☆25Updated 3 years ago
• CMB-BNU / PloidyFrost
  reference-free estimation of ploidy level from whole genome sequencing data based on de Bruijn graph
  ☆17Updated 2 years ago
• dongwei1220 / EasySpeciesTree
  Easily construct the ML species tree with single-copy gene shared by different species.
  ☆27Updated 7 years ago
• Adamtaranto / teloclip
  A tool for the recovery of unassembled telomeres from soft-clipped read alignments.
  ☆44Updated this week
• QuentinRougemont / EASYstrata
  genome annotation (RNAseq and TE) pipeline (draft)
  ☆12Updated 2 months ago
• slimsuite / chromsyn
  Chromosome-level synteny plotting using orthologous regions
  ☆30Updated last year
• vgteam / sv-genotyping-paper
  ☆31Updated 5 years ago
• lurebgi / chicken-T2T
  Scripts that used in our chicken T2T manuscript.
  ☆22Updated 2 years ago