Hands-on Sessions 1 and 2 at the Building Interpretable AI for Digital Pathology AMLD workshop 2021
☆22Apr 28, 2021Updated 5 years ago
Alternatives and similar repositories for interpretAI_DigiPath
Users that are interested in interpretAI_DigiPath are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Computational Framework to Analyse Spatial Heterogeneity in Visum, IMC or MIBI data sets☆12May 3, 2022Updated 4 years ago
- A Python library for deep learning on whole-slide images☆52Nov 5, 2021Updated 4 years ago
- Coincides with blogpost for using geojson and shapely☆33Nov 16, 2020Updated 5 years ago
- A curated and practical guide to foundation models in computational pathology. This repo brings together key architectures, learning tech…☆16Aug 28, 2025Updated 10 months ago
- Toolkit to help develop and run QuPath scripts from Eclipse and other IDEs, including over remote connections. (See README.md for more in…☆17Aug 19, 2020Updated 5 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Code for replicating results presented in the paper: "Quantifying Explainers of Graph Neural Networks in Computational Pathology"☆44May 19, 2021Updated 5 years ago
- The repository of NEUBIAS textbook 2021☆10Jan 24, 2022Updated 4 years ago
- Differential Dynamic Microscopy Analysis Code☆12Jun 25, 2025Updated last year
- Self-Supervised Vision Transformers Learn Visual Concepts in Histopathology (LMRL Workshop, NeurIPS 2021)☆144Jun 9, 2022Updated 4 years ago
- Python library for reading tiles from wsi tiff-files.☆19Updated this week
- Topological Feature Extraction on Whole Slide Images using Graph Neural Networks.☆22Aug 17, 2020Updated 5 years ago
- A Python library of pre- and post-processing tools for applying deep learning to whole-slide images☆22Jan 16, 2023Updated 3 years ago
- Variance stabilizing transformation for Gamma Poisson distributed data☆22Apr 11, 2023Updated 3 years ago
- SEGmentation using Graphs with Inexact aNd Incomplete labels☆21Mar 25, 2022Updated 4 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- OUT-OF-DATE! The new book is at https://bioimagebook.github.io☆21Jan 2, 2017Updated 9 years ago
- A tutorial demonstration of pathml on an example dataset for the manuscript "PathML: A unified framework for WSI analysis with deep learn…☆24Feb 8, 2022Updated 4 years ago
- ImageJ Macro Scripts showcased during Image Processing and Analysis for Life Scientists MOOC on EdX☆26Feb 17, 2020Updated 6 years ago
- This is the pytorch\DGL implementation of the AMIGO paper.☆10Feb 6, 2024Updated 2 years ago
- PAthological QUpath Obsession - QuPath and Python conversations☆135Apr 30, 2026Updated 2 months ago
- ZoomMIL is a multiple instance learning (MIL) method that learns to perform multi-level zooming for efficient Whole-Slide Image (WSI) cla…☆68Nov 3, 2022Updated 3 years ago
- StarDist plugin for ImageJ☆32May 9, 2022Updated 4 years ago
- One Model is All You Need: Multi-Task Learning Enables Simultaneous Histology Image Segmentation and Classification☆102Nov 27, 2024Updated last year
- Digital Lens-less Holographic Microscopy plugin for ImageJ.☆14Mar 6, 2022Updated 4 years ago
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Collection of useful (to me) python scripts for interacting with napari☆13Aug 14, 2022Updated 3 years ago
- GPU-accelerated image processing in QuPath☆16Oct 23, 2021Updated 4 years ago
- A standardized Python API with necessary preprocessing, machine learning and explainability tools to facilitate graph-analytics in comput…☆272Dec 23, 2023Updated 2 years ago
- Dlup are the Deep Learning Utilities for Pathology developed at the Netherlands Cancer Institute☆30Jun 14, 2026Updated last month
- ☆31Jun 24, 2025Updated last year
- ☆16Nov 3, 2023Updated 2 years ago
- Master repository that documents how the different parts come together of the open source hardware Fluorescence Activated (Microfluidic) …☆15Dec 8, 2025Updated 7 months ago
- Released code for the paper 'End-to-end Multiple Instance Learning for Whole-Slide Cytopathology of Urothelial Carcinoma'☆10Nov 24, 2021Updated 4 years ago
- Delete the label from a whole-slide image☆65Mar 18, 2021Updated 5 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Software for universal camera control and frames acquisition☆19Feb 6, 2023Updated 3 years ago
- development of network co-localization tool☆17Mar 2, 2026Updated 4 months ago
- Repository for the deep-learning framework DIVA-DAF which is build with historical document image analysis in mind.☆19Nov 7, 2024Updated last year
- 🔬 Code-free deep segmentation for computational pathology☆58Jun 14, 2024Updated 2 years ago
- Workshop materials for cBioPortal Webinar 5: API & R Client☆19May 28, 2020Updated 6 years ago
- H&E tailored Randaugment: automatic data augmentation policy selection for H&E-stained histopathology.☆56Jun 20, 2023Updated 3 years ago
- Classification of Single cells by Transfer Learning☆11Oct 11, 2025Updated 9 months ago