maweigert / neubias_academy_stardistLinks
☆31Updated 4 years ago
Alternatives and similar repositories for neubias_academy_stardist
Users that are interested in neubias_academy_stardist are comparing it to the libraries listed below
Sorting:
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- simple package for augmentation of n-dimensional arrays☆33Updated 2 years ago
- Python Jupyter notebooks for BioImageAnalysis, GPU-accelerated image processing, bio-image data science and more☆149Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- ☆28Updated this week
- Accelerated Pixel and Object Classifiers (APOC)☆58Updated 3 months ago
- GPU-accelerated image processing in QuPath☆15Updated 4 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆31Updated 3 years ago
- A first intoduction to scripting in Fiji using the ImageJ Macro language.☆26Updated last year
- A python algorithm for tracking cells in 3D time lapse images.☆64Updated last month
- NuSeT: A Deep Learning Tool for Reliably Separating and Analyzing Crowded Cells☆20Updated 5 years ago
- ☆14Updated 5 years ago
- This is the repository for a Python bioimage analysis course which establishes the fundamentals of image analysis in the context of biolo…☆135Updated 5 years ago
- QuPath extension for Cellsparse☆19Updated 5 months ago
- AnnotatorJ: ImageJ plugin for object annotation in 2D☆25Updated 3 months ago
- Official implementation of "A novel deep learning-based 3D cell segmentation framework for future image-based disease detection". (Howeve…☆22Updated 2 years ago
- Cloud-based data annotation tools for biological images☆82Updated last year
- napari plugin for cellpose (see www.cellpose.org) - an anatomical segmentation tool☆59Updated last year
- 3D shape analysis using deep learning☆28Updated 3 weeks ago
- A tool for cell instance aware segmentation in densely packed 3D volumetric images☆120Updated this week
- ☆32Updated 2 months ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- StarDist plugin for napari☆39Updated last year
- Utils and convenience functions for large-scale bio-image analysis.☆58Updated 2 months ago
- The repository of NEUBIAS textbook 2021☆11Updated 3 years ago
- Tools for distributed alignment of massive images☆87Updated last month
- Piecewise alignment for layers of mosaics☆29Updated last month
- PAthological QUpath Obsession - QuPath and Python conversations☆122Updated 2 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆128Updated last week