GabrielHoffman / dreamlet
Perform differential expression analysis on multi-sample single cell datasets using linear mixed models
☆20Updated 2 weeks ago
Related projects ⓘ
Alternatives and complementary repositories for dreamlet
- An r package that works as a wrapper to homologene☆42Updated last year
- ☆27Updated 3 months ago
- Robust, multivariate, multi-sample, multi-celltype QC for single cell RNA-seq data☆36Updated 2 years ago
- ☆29Updated last year
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆38Updated 2 years ago
- Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data☆33Updated 3 years ago
- A re-analysis of the [Single-cell transcriptomic analysis of Alzheimer’s disease](https://www.nature.com/articles/s41586-019-1195-2) usin…☆14Updated 11 months ago
- An R package to analyze single-cell V(D)J data☆24Updated last year
- Harvard FAS informatics scRNAseq workshop website☆37Updated 5 years ago
- Comprehensive pipeline for donor demultiplexing in single cell☆24Updated 5 months ago
- Discover differential transcript usage from polyA-captured single cell RNA-seq data☆49Updated last year
- Cell type specific enrichments using finemapped variants and quantitative epigenetic data☆42Updated last year
- Analysis methods for analysing single cell RNA-seq data; particularly with the goal of checking if tentative clusters of cells are signif…☆32Updated last year
- R package developed for single-cell RNA-seq analysis. It was designed using the Seurat framework, and offers existing and novel single-ce…☆24Updated last year
- ☆37Updated 3 years ago
- Bead-based single-cell atac processing☆31Updated 3 years ago
- R/Bioconductor package for working with 10x scATACseq data☆38Updated last year
- ☆18Updated 4 months ago
- Bioinformatics pipeline for single-cell 3' UTR isoform quantification☆15Updated this week
- Identify and correct invalid gene symbols☆55Updated this week
- An R wrapper for too-many-cells, for clustering single cells and analyzing cell clade relationships with colorful visualizations.☆25Updated 4 years ago
- Epigenetic cell-type deconvolution from Single-Cell Omic Reference profiles☆29Updated last year
- ☆15Updated 2 years ago
- R implementation of the Reshef and Rumker CNA method (https://github.com/immunogenomics/cna)☆13Updated last year
- Code repository for the snRNA-seq cross-tissue atlas project☆20Updated 2 years ago
- satuRn is a highly performant and scalable method for performing differential transcript usage analyses.☆20Updated last year
- ☆10Updated 4 months ago
- Clone identification from single-cell data☆59Updated 2 years ago
- ConsensusTME Gene Sets and R Script☆39Updated 5 months ago
- Building on material from Introduction to Single Cell RNA-Seq, this workshop aims to cover advanced topics, including TCR and trajectory …☆12Updated last year