Capybara: A computational tool to measure cell identity and fate transitions
☆63May 23, 2022Updated 4 years ago
Alternatives and similar repositories for Capybara
Users that are interested in Capybara are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- VoxHunt: Resolving human brain organoid heterogeneity through single-cell genomic comparison to spatial brain maps☆48Mar 1, 2024Updated 2 years ago
- Build predicted cell-cell interaction networks from single-cell data.☆10Jan 31, 2023Updated 3 years ago
- CellRegMap: A statistical framework for mapping context-specific regulatory variants using scRNA-seq☆26Aug 20, 2024Updated 2 years ago
- This is the alpha version of the CellOracle package☆487Apr 30, 2026Updated 4 months ago
- A Python implementation of the LEMUR algorithm for analyzing multi-condition single-cell RNA-seq data.☆28Jan 3, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- ☆14Oct 11, 2019Updated 6 years ago
- Framework for Unified Single-Cell Analysis (FUSCA) is a software package for single-cell data analysis developed in R. At the moment, it …☆22Feb 14, 2023Updated 3 years ago
- ☆11Nov 24, 2022Updated 3 years ago
- Multiome GRN inference.☆141Apr 10, 2026Updated 4 months ago
- ☆49Jan 28, 2026Updated 7 months ago
- Pairwise Hierarchical Model☆21Mar 11, 2022Updated 4 years ago
- An R library for conducting analyses on COMPASS data.☆19Jun 10, 2021Updated 5 years ago
- Global Waddington-OT☆23Mar 25, 2025Updated last year
- R package with collection of functions created and/or curated to aid in the visualization and analysis of single-cell data using R.☆311Jun 30, 2026Updated 2 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- CellRank: dynamics from multi-view single-cell data☆456Aug 24, 2026Updated last week
- Differential spatial enrichment across conditions☆28Jul 14, 2026Updated last month
- Interactively analyze single cell genomic data☆190Jan 14, 2026Updated 7 months ago
- The R Bioconductor package for scMAGeCK.☆13Jul 10, 2026Updated last month
- Color blindness friendly visualization of single-cell and bulk RNA-sequencing data☆215Dec 10, 2025Updated 8 months ago
- Create cisTarget databases☆62Jun 18, 2025Updated last year
- DIALOGUE is a dimensionality reduction method that uses cross-cell-type associations to identify multicellular programs (MCPs) and map th…☆125Jan 22, 2024Updated 2 years ago
- Batch Effect Correction of RNA-seq Data through Sample Distance Matrix Adjustment☆18Jun 3, 2021Updated 5 years ago
- CellRank's reproducibility repository.☆17Jan 13, 2022Updated 4 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆25Feb 24, 2025Updated last year
- Multi-resolution Variational Inference☆23Aug 17, 2026Updated last week
- ☆47Jul 24, 2025Updated last year
- ☆16Sep 1, 2023Updated 2 years ago
- Detecting Aberrant Splicing Events from RNA-sequencing data☆17Dec 10, 2024Updated last year
- Feature selection for preserving biological trajectories in single-cell data☆21Jun 24, 2026Updated 2 months ago
- scNMT-seq gastrulation☆44Feb 8, 2023Updated 3 years ago
- ☆12May 30, 2023Updated 3 years ago
- Single cell analysis tools for expression from RNA-seq in R☆10Feb 3, 2016Updated 10 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MRtree R implementation☆14Mar 1, 2023Updated 3 years ago
- SingleCellNet: classify single cells across species and platforms☆141Aug 21, 2023Updated 3 years ago
- Code used in article: Tracing cell-type evolution by cross-species comparison of cell atlases☆18Aug 11, 2020Updated 6 years ago
- A sandbox for benchmarking detection of out-of-reference cells in single-cell genomics data☆14Oct 21, 2024Updated last year
- Conversion between scRNA-seq objects☆209May 5, 2026Updated 3 months ago
- MASC: Mixed-effects Association testing for Single Cells☆16Apr 16, 2021Updated 5 years ago
- Aligning gene expression trajectories of single-cell reference and query systems☆90Jul 28, 2026Updated last month