Alternatives and similar repositories for Capybara:

Users that are interested in Capybara are comparing it to the libraries listed below

• CFeregrino / scWGCNA
  scWGCNA
  ☆56Updated 2 years ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 8 months ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆31Updated 9 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆70Updated 6 months ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆73Updated 6 months ago
• lhe17 / nebula
  ☆35Updated last year
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆71Updated 10 months ago
• KlugerLab / DAseq
  ☆39Updated 3 years ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated 11 months ago
• PoolLab / generecovery
  ☆29Updated last year
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆66Updated 9 months ago
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated last week
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆37Updated 2 years ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆44Updated 2 months ago
• LungCellAtlas / scRNAseq_pipelines
  Repository for the building, sharing and editing of scRNAseq pipelines for the Lung Cell Atlas
  ☆33Updated 4 years ago
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 6 months ago
• wmacnair / psupertime
  psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels
  ☆38Updated 2 years ago
• powellgenomicslab / DropletQC
  Nuclear fraction QC metric to detect empty droplets and damaged cells in scRNA-seq data
  ☆35Updated 3 years ago
• shenorrLabTRDF / cellAlign
  ☆38Updated 4 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 6 months ago
• scCOVID-19 / COVIDPBMC
  Multi-omics profiling of peripheral immune system response to SARS-CoV-2 infection
  ☆40Updated 3 years ago
• Teichlab / sctk
  ☆35Updated 5 months ago
• UPSUTER / GEMLI
  ☆30Updated last month
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆26Updated 3 months ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• tgen / banovichlab
  Public code repository for the Banovich Lab at the Translational Genomics Research Institute (TGen).
  ☆43Updated last year
• rargelaguet / mouse_organogenesis_10x_multiome_publication
  Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""
  ☆40Updated 2 years ago