morris-lab / CapybaraLinks
Capybara: A computational tool to measure cell identity and fate transitions
☆59Updated 3 years ago
Alternatives and similar repositories for Capybara
Users that are interested in Capybara are comparing it to the libraries listed below
Sorting:
- ☆41Updated last week
- Functional Inference of Gene Regulation☆45Updated 11 months ago
- A R package for integrated scRNA-seq data analysis using the RPCI algorithm☆44Updated last year
- Coarse-graining of large single-cell RNA-seq data into metacells☆81Updated 9 months ago
- Pan-Cancer Single Cell Classifier☆71Updated last year
- Gene regulatory network containing signed transcription factor-target gene interactions☆81Updated 3 weeks ago
- Clone of the Bioconductor repository for the scran package.☆42Updated 9 months ago
- Code to reproduce the analysis of "Decoding gene regulation in the mouse embryo using single-cell multi-omics""☆40Updated 2 years ago
- ☆55Updated 4 years ago
- ☆46Updated 3 years ago
- ☆63Updated 4 years ago
- R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data☆32Updated last year
- ☆59Updated 9 months ago
- scWGCNA☆61Updated 2 years ago
- R package for pathway analysis in scRNA-seq data☆73Updated 10 months ago
- psupertime is pseudotime ordering for single cell RNA-seq data with sequential labels☆40Updated 2 years ago
- ☆61Updated 5 years ago
- Single Cell Transcriptomics of 25 Human Organs to Create a Tabula Sapiens☆41Updated 2 years ago
- pycisTopic is a Python module to simultaneously identify cell states and cis-regulatory topics from single cell epigenomics data.☆68Updated this week
- Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression☆28Updated 6 months ago
- marker-based purification of cell types from single-cell RNA-seq datasets☆112Updated 2 months ago
- ☆41Updated 4 years ago
- Snakemake pipeline that works with the scIB package to benchmark data integration methods.☆73Updated 5 months ago
- ☆29Updated 2 years ago
- mutation(barcode) caller for 10x single cell data☆45Updated 5 years ago
- All software used for “Decoding human fetal liver haematopoiesis” (Popescu, Botting, Stephenson et al., 2019).☆39Updated 5 years ago
- Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).☆83Updated 9 months ago
- Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…☆52Updated 3 weeks ago
- SIB/Scilifelab autumn school in single cell omics 2019.☆22Updated 5 years ago
- ☆41Updated 4 years ago