Alternatives and similar repositories for Capybara

Users that are interested in Capybara are comparing it to the libraries listed below

• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆92Updated last month
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆97Updated 8 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆77Updated last year
• alexisvdb / singleCellHaystack
  Finding surprising needles (=genes) in haystacks (=single cell transcriptome data).
  ☆86Updated 2 months ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆83Updated last year
• immunogenomics / cna
  Covarying neighborhood analysis (CNA) is a method for finding structure in- and conducting association analysis with multi-sample single-…
  ☆56Updated 8 months ago
• cssmillie / ulcerative_colitis
  ☆63Updated 5 years ago
• KlugerLab / DAseq
  ☆41Updated 4 years ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆138Updated 6 months ago
• lhe17 / nebula
  ☆46Updated 2 months ago
• bioinfoDZ / RISC
  A R package for integrated scRNA-seq data analysis using the RPCI algorithm
  ☆44Updated last year
• carmonalab / STACAS
  R package for semi-supervised single-cell data integration
  ☆95Updated last week
• msraredon / NICHES
  Niche Interactions and Cellular Heterogeneity in Extracellular Signaling
  ☆58Updated this week
• BlishLab / scriabin
  Analysis of cell-cell communication at single-cell resolution
  ☆106Updated last year
• CFeregrino / scWGCNA
  scWGCNA
  ☆61Updated 3 years ago
• JEFworks-Lab / veloviz
  RNA-velocity informed embeddings for visualizing cellular trajectories
  ☆44Updated 3 years ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆80Updated 5 months ago
• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆51Updated last year
• theislab / destiny
  R package for single cell and other data analysis using diffusion maps
  ☆92Updated 2 months ago
• Coolgenome / iTALK
  ☆65Updated 6 years ago
• BayraktarLab / cell2fate
  Inference of RNA velocity modules for prediction of cell fates and integration with spatial and regulatory models.
  ☆84Updated 10 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 6 years ago
• buenrostrolab / stimATAC_analyses_code
  All code associated with manuscript detailing scATAC and scRNA-seq following stimulus of PBMCs
  ☆41Updated 2 years ago
• morris-lab / BiddyetalWorkflow
  This repository contains our CellTag workflow, as deployed in our 2018 Biddy et al., Nature paper.
  ☆32Updated last year
• faryabib / too-many-cells
  Cluster single cells and analyze cell clade relationships with colorful visualizations.
  ☆46Updated 4 years ago
• cellgeni / batchbench
  ☆46Updated 3 years ago
• Single-Cell-Genomics-Group-CNAG-CRG / Tumor-Immune-Cell-Atlas
  Code repository for the Tumor Immune Cell Atlas (TICA) project
  ☆63Updated 3 years ago
• MarioniLab / miloDE
  Framework for sensitive DE testing (using neighbourhoods)
  ☆76Updated 2 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆37Updated 6 years ago
• HectorRDB / condiments
  Trajectory inference across multiple conditions with condiments: differential topology, progression, differentiation, and expression
  ☆29Updated last year