Alternatives and similar repositories for Capybara:

Users that are interested in Capybara are comparing it to the libraries listed below

• buenrostrolab / FigR
  Functional Inference of Gene Regulation
  ☆40Updated 8 months ago
• CFeregrino / scWGCNA
  scWGCNA
  ☆58Updated 2 years ago
• elimereu / matchSCore2
  ☆53Updated 4 years ago
• abelson-lab / scATOMIC
  Pan-Cancer Single Cell Classifier
  ☆66Updated 9 months ago
• GfellerLab / SuperCell
  Coarse-graining of large single-cell RNA-seq data into metacells
  ☆75Updated 6 months ago
• Coolgenome / iTALK
  ☆59Updated 5 years ago
• saezlab / CollecTRI
  Gene regulatory network containing signed transcription factor-target gene interactions
  ☆73Updated 10 months ago
• jackbibby1 / SCPA
  R package for pathway analysis in scRNA-seq data
  ☆72Updated 7 months ago
• haniffalab / scRNA-seq_analysis
  Single cell RNA-seq analysis bundle
  ☆34Updated 5 years ago
• zijianni / SpotClean
  R package for decontaminating the spot swapping effect and recovering true expression in spatial transcriptomics data
  ☆31Updated 9 months ago
• NBISweden / single-cell_sib_scilifelab
  SIB/Scilifelab autumn school in single cell omics 2019.
  ☆22Updated 5 years ago
• Oshlack / speckle
  R package for specialised analysis of single cell data
  ☆38Updated 2 years ago
• PoolLab / generecovery
  ☆29Updated last year
• MarioniLab / scran
  Clone of the Bioconductor repository for the scran package.
  ☆41Updated 6 months ago
• cailab-tamu / scTenifoldKnk
  R/MATLAB package to perform virtual knockout experiments on single-cell gene regulatory networks.
  ☆44Updated 2 months ago
• minoda-lab / universc
  UniverSC: a flexible cross-platform single-cell data processing pipeline
  ☆45Updated last year
• saeyslab / spotless-benchmark
  A repository for benchmarking spatial deconvolution and mapping tools
  ☆33Updated last month
• omnideconv / spacedeconv
  A unified interface to spatial transcriptomics deconvolution tools
  ☆40Updated 2 weeks ago
• carmonalab / scGate
  marker-based purification of cell types from single-cell RNA-seq datasets
  ☆106Updated last month
• EDePasquale / DoubletDecon
  A tool for removing doublets from single-cell RNA-seq data
  ☆73Updated 4 years ago
• cole-trapnell-lab / cicero-release
  ☆59Updated 6 months ago
• Teichlab / Genes2Genes
  Aligning gene expression trajectories of single-cell reference and query systems
  ☆60Updated 5 months ago
• neurorestore / DE-analysis
  ☆37Updated 3 years ago
• KlugerLab / DAseq
  ☆40Updated 3 years ago
• single-cell-genetics / cardelino
  Clone identification from single-cell data
  ☆61Updated 2 years ago
• omnideconv / omnideconv
  Unified access to several second-generation deconvolution methods
  ☆66Updated last week
• cssmillie / ulcerative_colitis
  ☆60Updated 4 years ago
• lhe17 / nebula
  ☆36Updated last year
• sridnona / cb_sniffer
  mutation(barcode) caller for 10x single cell data
  ☆44Updated 4 years ago
• theislab / scib-pipeline
  Snakemake pipeline that works with the scIB package to benchmark data integration methods.
  ☆69Updated 2 months ago