quadbio / latent-legoLinks
Latent spaces for single cells
☆21Updated last year
Alternatives and similar repositories for latent-lego
Users that are interested in latent-lego are comparing it to the libraries listed below
Sorting:
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- generalized principal component analysis (GLM-PCA) implemented in python☆59Updated 4 years ago
- Conditional out-of-distribution prediction☆63Updated last year
- Archetypal Analysis network (AAnet)☆37Updated 8 months ago
- Parallel opt-SNE implementation with Python wrapper☆37Updated 3 years ago
- Framework for integrating heterogeneous modalities of data☆17Updated 3 years ago
- The art of using t-SNE for single-cell transcriptomics☆129Updated 10 months ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆74Updated 2 weeks ago
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆70Updated last week
- ☆100Updated last year
- Systematically learn and evaluate manifolds from high-dimensional data☆101Updated 3 weeks ago
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆22Updated 7 months ago
- Quantifying experimental perturbations at single cell resolution☆110Updated last year
- Here I show how to use Deep Autoencoders for single cell RNA sequencing data analysis☆19Updated 6 years ago
- ☆16Updated 3 years ago
- ☆63Updated 2 years ago
- Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…☆40Updated 3 years ago
- ☆17Updated 5 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 9 months ago
- ☆16Updated last year
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆26Updated 2 years ago
- Tools for building and manipulating graphs in Python☆43Updated last month
- Simulating single-cell data using gene regulatory networks 📠☆75Updated last year
- Deep learning for single-cell transcript counts☆89Updated 6 months ago
- ☆30Updated 3 years ago
- Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…☆14Updated 2 years ago
- Single-cell multi-omics integration using Optimal Transport☆46Updated last month