Alternatives and similar repositories for latent-lego

Users that are interested in latent-lego are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆38Updated 2 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated 10 months ago
• czbiohub-sf / simscity
  A library to simulate single-cell data
  ☆2Updated 2 years ago
• rs239 / schema
  Framework for integrating heterogeneous modalities of data
  ☆17Updated 2 years ago
• flo-compbio / monet
  Monet: An open-source Python package for analyzing scRNA-Seq data using PCA-based latent spaces
  ☆39Updated 3 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆72Updated last year
• theislab / batchglm
  Fit generalized linear models in python.
  ☆27Updated 2 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆108Updated 8 months ago
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆33Updated 4 months ago
• klarman-cell-observatory / Perturb-CITE-seq
  ☆15Updated 3 years ago
• scverse / scvi-tools-skeleton
  Template repository for creating novel models with scvi-tools
  ☆20Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• dawe / schist
  An interface for Nested Stochastic Block Model for single cell analysis
  ☆35Updated 2 months ago
• shwhalen / ml-pitfalls
  Notebooks accompanying the paper "Navigating the pitfalls of applying machine learning in genomics"
  ☆45Updated last year
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆44Updated 9 months ago
• andrewcharlesjones / cplvm
  Contrastive Poisson latent variable models (CPLVMs)
  ☆11Updated 3 years ago
• BIMSBbioinfo / bavaria
  Batch-adversarial variational auto-encoder (BAVARIA) for simultaneous dimensionality reduction and integration of single-cell ATAC-seq da…
  ☆14Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆62Updated 10 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 3 weeks ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 2 years ago
• SydneyBioX / SimBench
  ☆16Updated last year
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• KrishnaswamyLab / Multiscale_PHATE
  Creating multi-resolution embeddings and clusters from high dimensional data
  ☆53Updated 8 months ago
• calico / velodyn
  Dynamical systems methods for RNA velocity analysis
  ☆24Updated 4 years ago
• pachterlab / MCML
  ☆33Updated 3 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆21Updated 3 months ago
• aristoteleo / Scribe-py
  Regulatory networks with Direct Information in python
  ☆40Updated 2 years ago