quadbio / latent-legoLinks
Latent spaces for single cells
☆21Updated 2 years ago
Alternatives and similar repositories for latent-lego
Users that are interested in latent-lego are comparing it to the libraries listed below
Sorting:
- generalized principal component analysis (GLM-PCA) implemented in python☆60Updated 4 years ago
- This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…☆42Updated 2 years ago
- Archetypal Analysis network (AAnet)☆38Updated 10 months ago
- Conditional out-of-distribution prediction☆62Updated last year
- Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods☆23Updated 9 months ago
- ☆63Updated 2 years ago
- Maximum mean discrepancy comparisons for single cell profiling experiments☆18Updated 3 years ago
- Framework for integrating heterogeneous modalities of data☆17Updated 3 years ago
- A collection of scripts and tools for loading, processing, and handling single cell data.☆77Updated 2 months ago
- Systematically learn and evaluate manifolds from high-dimensional data☆104Updated last month
- Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.☆71Updated 2 months ago
- The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…☆150Updated 4 years ago
- Parallel opt-SNE implementation with Python wrapper☆38Updated 3 years ago
- Tools for building and manipulating graphs in Python☆45Updated last month
- Dynamical systems methods for RNA velocity analysis☆24Updated 4 years ago
- Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…☆18Updated 5 years ago
- ☆19Updated 2 years ago
- Functional and Learnable Cell dynamicS☆19Updated 6 months ago
- An unsupervised scRNA-seq analysis workflow with graph attention networks☆25Updated 2 years ago
- ☆16Updated 4 years ago
- Quantifying experimental perturbations at single cell resolution☆112Updated last year
- ☆101Updated last year
- Semi-supervised adversarial neural networks for classification of single cell transcriptomics data☆76Updated 11 months ago
- Density-preserving data visualization tools den-SNE and densMAP☆115Updated 4 years ago
- A Library for Denoising Single-Cell Data with Random Matrix Theory☆37Updated 2 years ago
- The art of using t-SNE for single-cell transcriptomics☆129Updated last year
- Alignment of spatial genomics data using deep Gaussian processes☆32Updated 2 years ago
- A simulator for single-cell expression data guided by gene regulatory networks☆70Updated last year
- Template repository for creating novel models with scvi-tools☆20Updated 2 years ago
- An interface for Nested Stochastic Block Model for single cell analysis☆36Updated 2 months ago