Alternatives and similar repositories for latent-lego

Users that are interested in latent-lego are comparing it to the libraries listed below

• willtownes / glmpca-py
  generalized principal component analysis (GLM-PCA) implemented in python
  ☆60Updated 4 years ago
• cantinilab / OT-scOmics
  This Python package will allow you to replicate the experiments from our research on applying Optimal Transport as a similarity metric in…
  ☆41Updated 2 years ago
• theislab / trVAE
  Conditional out-of-distribution prediction
  ☆63Updated last year
• rs239 / schema
  Framework for integrating heterogeneous modalities of data
  ☆17Updated 2 years ago
• facebookresearch / PoincareMaps
  The need to understand cell developmental processes has spawned a plethora of computational methods for discovering hierarchies from scRN…
  ☆148Updated 3 years ago
• pachterlab / picasso
  Picasso: a methods for embedding points in 2D in a way that respects distances while fitting a user-specified shape.
  ☆70Updated last year
• KrishnaswamyLab / AAnet
  Archetypal Analysis network (AAnet)
  ☆36Updated 6 months ago
• berenslab / rna-seq-tsne
  The art of using t-SNE for single-cell transcriptomics
  ☆127Updated 8 months ago
• omiq-ai / Multicore-opt-SNE
  Parallel opt-SNE implementation with Python wrapper
  ☆37Updated 3 years ago
• KrishnaswamyLab / scprep
  A collection of scripts and tools for loading, processing, and handling single cell data.
  ☆74Updated 3 weeks ago
• davisidarta / topometry
  Systematically learn and evaluate manifolds from high-dimensional data
  ☆100Updated 2 years ago
• ManchesterBioinference / GPcounts
  Gaussian process regression package for counts data with negative binomial and zero-inflated negative binomial likelihoods
  ☆22Updated 5 months ago
• KrishnaswamyLab / SAUCIE
  ☆100Updated 10 months ago
• KrishnaswamyLab / graphtools
  Tools for building and manipulating graphs in Python
  ☆42Updated last month
• Genentech / sVAE
  ☆63Updated 2 years ago
• calico / scmmd
  Maximum mean discrepancy comparisons for single cell profiling experiments
  ☆16Updated 3 years ago
• bowang-lab / scFormer
  ☆19Updated 2 years ago
• berenslab / umi-normalization
  Companion repository to Lause, Berens & Kobak (2021): "Analytic Pearson residuals for normalization of single-cell RNA-seq UMI data", Gen…
  ☆40Updated 3 years ago
• KrishnaswamyLab / MELD
  Quantifying experimental perturbations at single cell resolution
  ☆109Updated 10 months ago
• cantinilab / Mowgli
  Single-cell multi-omics integration using Optimal Transport
  ☆46Updated 11 months ago
• Bertinus / FLeCS
  Functional and Learnable Cell dynamicS
  ☆17Updated 2 months ago
• calico / scnym
  Semi-supervised adversarial neural networks for classification of single cell transcriptomics data
  ☆75Updated 7 months ago
• Center-for-Health-Data-Science / scDGD
  This is the repository for the single-cell transcriptomics application of the Deep Generative Decoder (DGD), developed by the Krogh group…
  ☆14Updated last year
• ioanabica / DiffVAE
  Code for Nature Scientific Reports 2020 paper: "Unsupervised generative and graph neural methods for modelling cell differentiation" by I…
  ☆18Updated 5 years ago
• scvae / scvae
  Deep learning for single-cell transcript counts
  ☆89Updated 4 months ago
• hhcho / densvis
  Density-preserving data visualization tools den-SNE and densMAP
  ☆114Updated 4 years ago
• pachterlab / CBP_2021
  ☆16Updated 3 years ago
• RabadanLab / randomly
  A Library for Denoising Single-Cell Data with Random Matrix Theory
  ☆37Updated last year
• SydneyBioX / SimBench
  ☆16Updated last year
• kasparmartens / BasisVAE
  PyTorch implementation of BasisVAE: Translation-invariant feature-level clustering with Variational Autoencoders
  ☆42Updated 5 years ago