AlexsLemonade / RNA-Seq-Exercises
Exercises for training scientists to perform some RNA-seq analyses.
☆11Updated 5 years ago
Alternatives and similar repositories for RNA-Seq-Exercises:
Users that are interested in RNA-Seq-Exercises are comparing it to the libraries listed below
- The vignette provided has a basic sketch of the steps we interactively will go through to build a package with devtools, explains version…☆11Updated 4 years ago
- qtools has helper functions to submit jobs to compute clusters (PBS on TSCC, SGE on oolite) from within Python☆21Updated last year
- R interface to genome annotation files and the UCSC genome browser☆29Updated 2 weeks ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆31Updated 4 years ago
- Haystack: Epigenetic Variability and Transcription Factor Motifs Analysis Pipeline☆46Updated 2 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- Scripts for reproducing analyses of large RNA-seq datasets☆15Updated 5 years ago
- R package of techniques for comparing clusterings of single-cell sequencing data☆37Updated 9 months ago
- Differential expression and allelic analysis, nonparametric statistics☆28Updated 3 weeks ago
- Gene network analysis☆19Updated 2 years ago
- Repository for the Epigenomics Tutorial hold at ISMB 2017 in Prague☆14Updated 4 years ago
- Modular blocks to build Snakemake workflows for reproducible NGS analyses☆22Updated 5 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Easily run WDL workflows on GCP☆13Updated 3 years ago
- A python script used to annotate genomic intervals.☆18Updated 4 years ago
- Tutorial for working with cloud infrastructure and AWS from R☆20Updated 7 years ago
- gkmSVM R package☆17Updated 7 years ago
- Build an index for your BAM Index (BAI)☆17Updated 9 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 7 months ago
- Public data resources and Bioconductor: The goal of this workshop is to introduce Bioconductor packages for finding, accessing, and using…☆14Updated 3 weeks ago
- Code for RNA-seq gene coexpression analysis☆9Updated 3 years ago
- The command-line interface to GGD☆42Updated 2 years ago
- A suite for the analysis of CLIP-Seq datasets.☆12Updated 3 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆30Updated 3 months ago
- A simple, intuitive and Efficient single cell binary Data Storage format☆15Updated 5 years ago
- A Feature Density Estimator for High-Throughput Sequence Tags☆23Updated 3 years ago
- Repository for signature genes from Immune Cell Atlas☆18Updated 5 years ago
- MuSiCa - Mutational Signatures in Cancer☆23Updated last year