qiyunlab / HGTectorLinks
HGTector2: Genome-wide prediction of horizontal gene transfer based on distribution of sequence homology patterns.
☆143Updated 2 years ago
Alternatives and similar repositories for HGTector
Users that are interested in HGTector are comparing it to the libraries listed below
Sorting:
- A python pipeline to identify IS (Insertion Sequence) elements in genome and metagenome☆101Updated last month
- Insertion sequences (Insertion Element) [https://en.wikipedia.org/wiki/Insertion_sequence] collected from ISfinder (https://isfinder.biot…☆72Updated 5 years ago
- A toolbox for identifying mobile genetic element (MGE) insertions from short-read sequencing data of bacterial isolates.☆124Updated 2 years ago
- DDBJ Fast Annotation and Submission Tool☆83Updated 4 months ago
- Foreign Contamination Screening caller scripts and documentation☆155Updated 10 months ago
- Automated long-read first bacterial genome assembly tool implemented in Snakemake using Snaketool.☆146Updated last week
- Development version of Easyfig☆103Updated 2 years ago
- Horizontal gene transfer (HGT) identification pipeline☆65Updated 2 years ago
- A toolbox for comparative genomics.☆108Updated 4 years ago
- A tool for generating consensus long-read assemblies for bacterial genomes☆207Updated last week
- DAS Tool☆166Updated last year
- Find endogenous viral elements in genomes☆21Updated 3 months ago
- OPERA-MS - Hybrid Metagenomic Assembler☆99Updated last year
- ☆153Updated last year
- Classification of Eukaryotic and Prokaryotic sequences from metagenomic datasets☆75Updated last year
- All of my various bioinformatic scripts fit for public consumption (loosely defining "fit")☆80Updated 2 years ago
- GET_HOMOLOGUES: a versatile software package for pan-genome analysis☆123Updated last week
- Parsnp was designed to align the core genome of hundreds to thousands of bacterial genomes within a few minutes to few hours. Input can b…☆148Updated 3 months ago
- ClonalFrameML: Efficient Inference of Recombination in Whole Bacterial Genomes☆117Updated last year
- Software for prediction of plasmid sequences in metagenomic assemblies☆108Updated 4 years ago
- Contains a fasta format database of a large variety of mobile genetic elements and an annotation file☆52Updated 4 years ago
- MOB-suite: Software tools for clustering, reconstruction and typing of plasmids from draft assemblies☆163Updated 9 months ago
- BSR-Based Allele Calling Algorithm☆148Updated last week
- Interactive quality assessment of genome assemblies☆117Updated last month
- MitoZ: A toolkit for assembly, annotation, and visualization of animal mitochondrial genomes☆134Updated last year
- This is the source code for multisamples ARGs profiling using SARG2.0 database☆46Updated 4 years ago
- Metatranscriptomics Tutorial☆66Updated 2 years ago
- Reorients assembled microbial sequences☆131Updated 5 months ago
- Bioinformatics tool to find integrons in bacterial genomes☆82Updated 8 months ago
- Recovery of prokaryotic genomes from shotgun metagenomic sequencing data☆62Updated 4 years ago