VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
☆19Mar 10, 2018Updated 8 years ago
Alternatives and similar repositories for VVP-pub
Users that are interested in VVP-pub are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Rails application for storing and parsing clinical exome VCF files. Gene annotations can be retrieved via Biomart integration from Ensemb…☆10May 7, 2017Updated 8 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Mar 4, 2019Updated 7 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- VariantStore: A Large-Scale Genomic Variant Search Index☆39Jul 9, 2021Updated 4 years ago
- 180+ Java applications for analyzing next generation sequencing data from ChIPSeq, RNASeq, BisSeq, DNASeq, variant annotation/ filtering,…☆18Feb 19, 2026Updated last month
- Curated list of resources for variant prioritization☆14Nov 18, 2025Updated 4 months ago
- TAPES : a Tool for Assessment and Prioritisation in Exome Studies☆25Sep 30, 2025Updated 5 months ago
- A phenotype-based tool for variant prioritization in WES and WGS data☆42Nov 21, 2022Updated 3 years ago
- PathOS is a clinical application for filtering, analysing and reporting on NGS variants☆29Mar 30, 2021Updated 4 years ago
- Official code repository for JAX-CNV☆14Jan 16, 2020Updated 6 years ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- Visualisation and prioritisation of genomic variants from human exome sequencing projects☆13Apr 23, 2019Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Aug 18, 2020Updated 5 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- ☆18Jun 3, 2020Updated 5 years ago
- NExt generation Analysis Toolbox☆14Oct 18, 2015Updated 10 years ago
- A fork of the project Excavator2 from sourceforge.☆10Jun 29, 2017Updated 8 years ago
- Software for creating and comparing genome fingerprints.☆11Jun 30, 2024Updated last year
- RUFUS k-mer based genomic variant detection☆54Jan 5, 2026Updated 2 months ago
- Allele frequency filtering for Mendelian variant discovery☆18Sep 27, 2016Updated 9 years ago
- Open-source opinionated Galaxy-based framework for microbiota analysis☆14Jan 21, 2021Updated 5 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆18May 9, 2024Updated last year
- Protocols for Secure Genomic Computation☆12Aug 28, 2017Updated 8 years ago
- CAVA (Clinical Annotation of VAriants)☆14Sep 28, 2018Updated 7 years ago
- Generate an enhanced VCF files from ClinVar XML Full releases☆15Feb 23, 2026Updated last month
- Scalable gVCF merging and joint variant calling for population sequencing projects☆179Apr 12, 2024Updated last year
- Short reads aligner for NIPT/CNV☆16Oct 10, 2018Updated 7 years ago
- An online database of variants functionally demonstrated to affect (or not affect) splicing.☆11Mar 20, 2025Updated last year
- Quality control on genetic variants from next-generation sequencing data using random forest☆20May 26, 2022Updated 3 years ago
- VCF-Miner: A graphical user interface for sorting, filtering and querying annotated VCF Files☆37Nov 19, 2019Updated 6 years ago
- C++ library for analysing and storing large-scale cohorts of sequence variant data☆17Aug 27, 2019Updated 6 years ago
- A simple observation count database☆11Jan 13, 2026Updated 2 months ago
- MrMosaic (Genomic Mosaic Structural Variant Caller)☆15Jul 21, 2017Updated 8 years ago
- Natural Language Search and Analysis of High Dimensional Genomic Data☆48Mar 12, 2026Updated last week
- ☆32Aug 2, 2022Updated 3 years ago
- ☆55Jan 11, 2023Updated 3 years ago
- Next-generation sequencing analysis pipelines & scrips☆10Nov 25, 2020Updated 5 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆36Sep 13, 2023Updated 2 years ago