Yandell-Lab / VVP-pub
VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variants
☆19Updated 7 years ago
Alternatives and similar repositories for VVP-pub:
Users that are interested in VVP-pub are comparing it to the libraries listed below
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 4 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Fast, accurate and simple to use command line tool for variant detection in NGS data.☆10Updated 5 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencing☆16Updated 11 months ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆27Updated 10 months ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Suite of tools for analysing off-target reads to find CNVs, homozygous regions, and shared haplotypes☆29Updated 9 months ago
- A small repo for storing the code for making the files and html for CCRs.☆22Updated 5 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 2 months ago
- Structural Variation breakpoint discovery via adaptive learning☆15Updated last year
- CAVA (Clinical Annotation of VAriants)☆14Updated 6 years ago
- ☆29Updated 4 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- ☆21Updated 3 weeks ago
- Prioritize structural variants based on CADD scores☆29Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 2 months ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- What is true, thank you, ernestly. A large variant benchmarking tool analogous to hap.py for small variants.☆32Updated last year
- Call regions of homozygosity and make tentative UPD calls☆11Updated 5 months ago
- Automated human exome/genome variants detection from FASTQ files☆22Updated 3 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting very…☆20Updated 6 years ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 8 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- a Shiny/R application to view and annotate copy number variations☆27Updated 2 years ago