Helpful handful of programs, completely open-source and free
☆11Mar 26, 2021Updated 4 years ago
Alternatives and similar repositories for SNPchimpRepo
Users that are interested in SNPchimpRepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaImpute2: pedigree- and population-based genotype imputation☆12Mar 18, 2026Updated last week
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Dec 12, 2025Updated 3 months ago
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆13Feb 26, 2021Updated 5 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 6 years ago
- MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model☆16Feb 15, 2026Updated last month
- ☆10Nov 18, 2022Updated 3 years ago
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated last year
- Haplotype phasing software☆70Dec 5, 2020Updated 5 years ago
- CRAN Task View: Agricultural Science☆32Updated this week
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆17Feb 26, 2018Updated 8 years ago
- 采用开源论坛系统Flarum建设GATK中文社区，该论坛所有帖子将以markdown代码形式发帖，所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是：https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- A project to survey the possibilities of a graph database Neo4j in building decision tree algorithms using stored procedures.☆10Nov 21, 2023Updated 2 years ago
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆71Jul 6, 2023Updated 2 years ago
- R package for pedigree inference based on SNP data☆28Jan 4, 2026Updated 2 months ago
- Julia for Whole-genome Analysis Software☆104Updated this week
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- Determine the biological sex of a human whole-genome BAM file☆16Feb 10, 2019Updated 7 years ago
- ☆15Jan 16, 2018Updated 8 years ago
- 🧬 Measure quality of your tests 🧪☆23Jun 2, 2025Updated 9 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- NordVPN Threat Protection Pro™ • AdTake your cybersecurity to the next level. Block phishing, malware, trackers, and ads. Lightweight app that works with all browsers.
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆15Apr 28, 2025Updated 10 months ago
- blupADC:An useful tool for animal and plant breeding☆31Nov 22, 2024Updated last year
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- DarkHorse2 source code☆10May 3, 2022Updated 3 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆12Aug 8, 2025Updated 7 months ago
- SNP effect predictor☆11Feb 2, 2016Updated 10 years ago
- Re-encryption by proxy and (additive) homomorphic encryption☆13Oct 10, 2018Updated 7 years ago
- Vector Approximate Message Passing inference framework for GWAS☆19Jan 14, 2026Updated 2 months ago
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- A WhatsApp clone mobile app built with React Native, Expo, and TypeScript. Provides similar functionality to WhatsApp such as chatting, c…☆18Feb 24, 2024Updated 2 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆17Jan 29, 2026Updated last month