Helpful handful of programs, completely open-source and free
☆11Mar 26, 2021Updated 5 years ago
Alternatives and similar repositories for SNPchimpRepo
Users that are interested in SNPchimpRepo are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- AlphaImpute2: pedigree- and population-based genotype imputation☆13Jun 12, 2026Updated last month
- An R package to compute relationship matrices for diploid and autopolyploid species☆11Updated this week
- RRSelection: A linkage disequilibrium method to detect selection region across population VCF☆14Feb 11, 2019Updated 7 years ago
- Genomic Annotation in Livestock for positional candidate LOci☆14Feb 26, 2021Updated 5 years ago
- GS3, software for genomic prediction and whole genome Bayesian analysis☆10Dec 18, 2017Updated 8 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- A script to extract graph structure from multiple sequence alignment result and output as GFA/JSON for vg☆11Mar 27, 2019Updated 7 years ago
- Haplotype phasing software☆71Dec 5, 2020Updated 5 years ago
- ☆10Nov 18, 2022Updated 3 years ago
- CViTjs - Chromosome Viewing Tool. A javascript tool for quick whole-genome views of data.☆11Jan 15, 2021Updated 5 years ago
- Helpers for working with ChromHMM (http://compbio.mit.edu/ChromHMM/)☆18Feb 26, 2018Updated 8 years ago
- Determine the biological sex of a human whole-genome BAM file☆16Feb 10, 2019Updated 7 years ago
- R package that constructs (non)additive genetic relationship matrices, and their inverses, from a pedigree to be used in linear mixed eff…☆23Sep 4, 2024Updated last year
- Practical Deep Learning for Genomic Prediction: A Keras based guide to implement deep learning☆73Jul 6, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- 采用开源论坛系统Flarum建设GATK中文社区，该论坛所有帖子将以markdown代码形式发帖，所有的markdown源代码都会同步存放在此github的organization的这个project下面。GATK中文社区地址是：https://www.gatk.com.…☆17Oct 21, 2017Updated 8 years ago
- CRAN Task View: Agricultural Science☆32Jul 5, 2026Updated 2 weeks ago
- Snakemake pipeline for benchmarking cell-type deconvolution methods and deconvolving real bulk RNA-seq data with the use of scRNA-seq dat…☆16Apr 28, 2025Updated last year
- Julia for Whole-genome Analysis Software☆107Jul 12, 2026Updated last week
- A project to survey the possibilities of a graph database Neo4j in building decision tree algorithms using stored procedures.☆10Nov 21, 2023Updated 2 years ago
- Breast cancer risk prediction using genotyped data☆12Oct 11, 2018Updated 7 years ago
- R package for pedigree inference based on SNP data☆29Jan 4, 2026Updated 6 months ago
- Chromosome Scale Assembler: A high-throughput chromosome scale genome assembly pipeline for vertebrate genomes☆10Oct 16, 2024Updated last year
- Sentieon DNAscope + Machine Learning Model☆12Mar 19, 2025Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- ☆15Jan 16, 2018Updated 8 years ago
- xQTLbiolinks: an R package for integrative analysis with xQTL data☆18Jan 29, 2026Updated 5 months ago
- RDF and SPARQL ideas to build on top of [odgi](https://github.com/pangenome/odgi)☆13Mar 20, 2024Updated 2 years ago
- Novo&Stitch is a genome assembly reconciliation tool based on optical map.☆10Oct 21, 2019Updated 6 years ago
- Parses and Plots Illumina SAV files☆13Jan 30, 2019Updated 7 years ago
- DarkHorse2 source code☆11May 3, 2022Updated 4 years ago
- MicroPheno Project☆12Oct 21, 2022Updated 3 years ago
- Convolutional Embedded Networks for Population Scale Clustering and Bio-ancestry Inferencing☆11Jan 7, 2020Updated 6 years ago
- blupADC:An useful tool for animal and plant breeding☆32Nov 22, 2024Updated last year
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A tool to implement Genomic Prediction Experiments using Deep Learning☆17Mar 24, 2023Updated 3 years ago
- Re-encryption by proxy and (additive) homomorphic encryption☆13Oct 10, 2018Updated 7 years ago
- scRNA数据分析中文教程☆11Jul 29, 2019Updated 6 years ago
- Minimac3 is a low memory and computationally efficient implementation of the genotype imputation algorithms. Minimac3 is designed to hand…☆30Mar 28, 2022Updated 4 years ago
- MultiSuSiE is a multi-ancestry extension of the Sum of Single Effects model☆19Jul 16, 2026Updated last week
- Supporting code for the paper "Predicting aptamer sequences that interact with target proteins using an Aptamer-Protein Interaction class…☆15Dec 31, 2021Updated 4 years ago
- The local version of high-definition likelihood inference of genetic correlations (HDL-L)☆14Aug 8, 2025Updated 11 months ago