macarthur-lab / gnomad_browserLinks
gnomAD browser pre-ASHG 2018
☆33Updated 4 years ago
Alternatives and similar repositories for gnomad_browser
Users that are interested in gnomad_browser are comparing it to the libraries listed below
Sorting:
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆39Updated 4 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Code associated with 2019 manuscript entitled "Transcript expression-aware annotation improves rare variant discovery and interpretation…☆33Updated 3 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- Exon-exon splice junctions across SRA☆42Updated 4 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 4 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 4 months ago
- Fast fusion detection using kallisto☆79Updated 3 months ago
- Flexible Bayesian inference of mutational signatures☆36Updated 2 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated 3 months ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆28Updated 2 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Multi-sample somatic variant caller☆52Updated 3 years ago