macarthur-lab / gnomad_browser
gnomAD browser pre-ASHG 2018
☆33Updated 4 years ago
Alternatives and similar repositories for gnomad_browser:
Users that are interested in gnomad_browser are comparing it to the libraries listed below
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆29Updated 4 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆34Updated 8 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆48Updated 5 years ago
- Mapped QC analysis program☆43Updated 6 years ago
- Estimate damage in standard NGS library preparation. Incompatible with library preparation methods from which the imbalance is lost (such…☆53Updated 7 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆42Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 8 years ago
- Website to analyze conflicting assertions in ClinVar☆18Updated last year
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆26Updated last week
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 4 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- DriverPower☆26Updated 2 months ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- highly-efficient & lightweight mutation signature matrix aggregation☆19Updated 3 years ago
- 📊Evaluating, filtering, comparing, and visualising VCF☆27Updated 2 years ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆22Updated 6 years ago
- Tutorials covering various topics in genomic data analysis.☆16Updated 6 years ago
- Tissue-specific variant annotation☆10Updated 6 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated last year
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 7 years ago
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated ma…☆49Updated 2 years ago
- Documenting usage and experience with bioinformatic tools☆41Updated 9 years ago