macarthur-lab / gnomad_browserLinks
gnomAD browser pre-ASHG 2018
☆33Updated 4 years ago
Alternatives and similar repositories for gnomad_browser
Users that are interested in gnomad_browser are comparing it to the libraries listed below
Sorting:
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.☆30Updated 4 years ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.☆49Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- An awk-like VCF parser☆56Updated last year
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.☆32Updated 9 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆40Updated 4 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Automated human exome/genome variants detection from FASTQ files☆23Updated 4 years ago
- Thousand Variant Callers Project Repository☆73Updated 5 years ago
- A tool for evaluating RNA seq mapping☆22Updated 6 years ago
- Genomes on the Cloud, Mapping & Variant Calling Pipelines☆35Updated 8 years ago
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- A method to identify structural variation from sequencing data in target regions☆32Updated 5 years ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).☆30Updated 8 years ago
- Bamgineer: Introduction of simulated allele-specific copy number variants into exome and targeted sequence data sets☆37Updated 5 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- GARFIELD-NGS: Genomic vARiants FIltering by dEep Learning moDels in NGS☆17Updated 6 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆28Updated 3 months ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNA☆27Updated 5 years ago
- ☆78Updated 11 years ago
- CAVA (Clinical Annotation of VAriants)☆14Updated 7 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- R package for inferring copy number from read depth☆32Updated 3 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago