macarthur-lab / gnomad_browser
gnomAD browser pre-ASHG 2018
β33Updated 4 years ago
Alternatives and similar repositories for gnomad_browser:
Users that are interested in gnomad_browser are comparing it to the libraries listed below
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq dataβ42Updated 2 years ago
- CLAMMS is a scalable tool for detecting common and rare copy number variants from whole-exome sequencing data.β29Updated 3 years ago
- πEvaluating, filtering, comparing, and visualising VCFβ27Updated last year
- Genomes on the Cloud, Mapping & Variant Calling Pipelinesβ33Updated 7 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.β28Updated 6 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing readsβ31Updated last year
- QC3, a quality control tool designed for DNA sequencing data for raw data, alignment, and variant calling.β32Updated 8 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencingβ37Updated 3 years ago
- β23Updated 2 months ago
- utilities for working with IGV: opening files remotely in either desktop IGV or a web viewer (igv.js), creating screenshots, etc.β48Updated 5 years ago
- Documenting usage and experience with bioinformatic toolsβ41Updated 9 years ago
- Keep Me Around: Intron Retention Detectionβ29Updated 6 years ago
- Mapped QC analysis programβ43Updated 6 years ago
- VVP (VAAST Variant Prioritizer) rapidly prioritizes genetic variantsβ19Updated 6 years ago
- SiNVICT: Ultra-Sensitive Detection of Single Nucleotide Variants and Indels in Circulating Tumour DNAβ27Updated 4 years ago
- A method to identify structural variation from sequencing data in target regionsβ31Updated 4 years ago
- smCounter: a versatile UMI-aware variant caller to detect both somatic and germline SNVs and indels. Published in article "Detecting veryβ¦β20Updated 5 years ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number vaβ¦β22Updated 5 years ago
- Splice junction analysis and filtering from BAM filesβ39Updated 2 years ago
- filtering trio-based genetic variants in VCFs for clinical reviewβ21Updated 4 years ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githuβ¦β26Updated 2 months ago
- Tools to handle reads sequenced with unique molecular identifiers (UMIs).β30Updated 7 years ago
- DriverPowerβ26Updated 3 weeks ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analysesβ31Updated 3 years ago
- Interpretable prioritization of splice variants in diagnostic next-generation sequencingβ16Updated 9 months ago
- Analysis from kallisto paperβ32Updated 9 years ago
- R package for inferring copy number from read depthβ32Updated 2 years ago
- A set of tools to annotate VCF files with expression and readcount dataβ29Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancerβ45Updated this week
- DeTiN is designed to measure tumor-in-normal contamination and improve somatic variant detection sensitivity when using a contaminated maβ¦β49Updated 2 years ago