Alternatives and similar repositories for terastructure

Users that are interested in terastructure are comparing it to the libraries listed below

• stephaniehicks / qsmooth
  Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…
  ☆52Updated 2 years ago
• kkdey / Logolas
  R package for Enrichment Depletion Logos (EDLogos) and String Logos
  ☆27Updated 6 years ago
• leekgroup / recount
  R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/
  ☆41Updated 9 months ago
• stephenslab / rss
  RSS: Regression with Summary Statistics
  ☆51Updated last year
• Teichlab / GPfates
  ☆21Updated 8 years ago
• lcrawlab / BANNs
  Code and simulations using biologically annotated neural networks
  ☆21Updated 4 years ago
• dcgerard / vicar
  Various Ideas for Confounder Adjustment in Regression
  ☆24Updated 2 years ago
• mikelove / alpine
  Modeling and correcting fragment sequence bias for RNA-seq
  ☆24Updated last year
• gkichaev / PAINTOR_V2.1
  ☆22Updated 8 years ago
• kkdey / CountClust
  A R package for Grade of Membership model and Visualization of counts data:
  ☆32Updated 4 years ago
• friend1ws / pmsignature
  R package for extracting mutation signatures from a list of somatic mutations
  ☆37Updated 6 years ago
• ejfertig / NSFBiosketch
  R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch
  ☆38Updated 8 years ago
• Shians / Glimma
  Glimma R package
  ☆50Updated last year
• rajanil / msCentipede
  A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.
  ☆26Updated 9 years ago
• ttriche / bayesCC
  Bayesian Consensus Clustering, packaged up from code by Eric F. Lock
  ☆19Updated 2 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• stephenslab / effective-computing
  Effective Computing—Resources for Computational Biologists
  ☆26Updated 5 years ago
• nickFurlotte / pylmm
  A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.
  ☆43Updated 9 years ago
• leekgroup / phenopredict
  Use gene expression to predict phenotype sample information
  ☆19Updated 7 years ago
• compbiomed / celda
  Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data
  ☆48Updated 6 years ago
• Danko-Lab / rtfbs_db
  Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.
  ☆23Updated 6 years ago
• stephens999 / ashr
  An R package for adaptive shrinkage
  ☆84Updated 2 months ago
• PhanstielLab / Sushi
  Tools for visualizing genomics data
  ☆69Updated 3 years ago
• junyangq / snpnet
  snpnet: Fast and scalable lasso/elastic-net solver for large SNP data
  ☆35Updated last year
• Nealelab / UKBB_ldsc
  Sample code for ldsc analyses in UKBB
  ☆31Updated 2 years ago
• thelovelab / tximeta
  Transcript quantification import with automatic metadata detection
  ☆67Updated last week
• csoneson / countsimQC
  countsimQC - Compare characteristic features of count data sets
  ☆29Updated 2 months ago
• rhondabacher / SCnorm
  Normalization for single cell RNA-seq data
  ☆48Updated 3 months ago
• lcolladotor / derfinder
  Annotation-agnostic differential expression analysis of RNA-seq data via expressed regions-level or single base-level approaches
  ☆45Updated 9 months ago
• Simon-Coetzee / motifBreakR
  A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.
  ☆29Updated last year