StoreyLab / terastructureLinks
TeraStructure is a new algorithm to fit Bayesian models of genetic variation in human populations on tera-sample-sized data sets (10^12 observed genotypes, i.e., 1M individuals at 1M SNPs). This package provides a scalable, multi-threaded C++ implementation that can be run on a single computer.
☆49Updated 5 years ago
Alternatives and similar repositories for terastructure
Users that are interested in terastructure are comparing it to the libraries listed below
Sorting:
- Smooth quantile normalization (qsmooth) is a generalization of quantile normalization, which is an average of the two types of assumption…☆52Updated 3 years ago
- Code and simulations using biologically annotated neural networks☆21Updated 4 years ago
- Various Ideas for Confounder Adjustment in Regression☆24Updated 2 years ago
- ☆21Updated 8 years ago
- R package for Enrichment Depletion Logos (EDLogos) and String Logos☆27Updated 7 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated last year
- ☆22Updated 8 years ago
- Bayesian Hierarchical Modeling for Clustering Single Cell Genomic Data☆48Updated 6 years ago
- R package for the recount2 project. Documentation website: http://leekgroup.github.io/recount/☆41Updated last year
- RSS: Regression with Summary Statistics☆51Updated last year
- Bayesian Consensus Clustering, packaged up from code by Eric F. Lock☆19Updated 2 years ago
- countsimQC - Compare characteristic features of count data sets☆29Updated last month
- R package for extracting mutation signatures from a list of somatic mutations☆37Updated 6 years ago
- A R package for Grade of Membership model and Visualization of counts data:☆32Updated 4 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- Descriptive probabilistic marker gene approach to single-cell pseudotime inference☆29Updated 6 years ago
- Sample code for ldsc analyses in UKBB☆32Updated 2 years ago
- Query sequence data (VCF/BCF1/BCF2, Tabix, BGEN, PLINK) in R☆32Updated 2 months ago
- 7C: Computational Chromosome Conformation Capture by Correlation of ChIP-seq at CTCF motifs☆13Updated 2 months ago
- Parse TF motifs from public databases, read into R, and scan using 'rtfbs'.☆23Updated 7 years ago
- R markdown file to extract list of collaborators and affiliations from pubmed for NSF biosketch☆38Updated 8 years ago
- A hierarchical multiscale model for inferring transcription factor binding from chromatin accessibility data.☆26Updated 9 years ago
- A fast and lightweight python-based linear mixed-model solver for use in genome-wide association studies.☆43Updated 10 years ago
- snpnet: Fast and scalable lasso/elastic-net solver for large SNP data☆35Updated last year
- Dimensionality reduction for single cell RNA-seq data☆36Updated 5 years ago
- ☆30Updated 5 months ago
- Fluff is a Python package that contains several scripts to produce pretty, publication-quality figures for next-generation sequencing exp…☆71Updated last year
- Glimma R package☆50Updated last year
- Tools for visualizing genomics data☆69Updated 4 years ago
- Curated Data From The Cancer Genome Atlas (TCGA) as MultiAssayExperiment Objects☆44Updated 3 weeks ago