Google Colab notebook for Cellpose
☆11Aug 21, 2025Updated 9 months ago
Alternatives and similar repositories for cellpose-colab
Users that are interested in cellpose-colab are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A relabeling tool for tiled segmentation with Dask☆17Sep 24, 2024Updated last year
- Development of PICASSO plugin for napari☆16Jan 17, 2023Updated 3 years ago
- Python program to generate NetworkX graphs from segmented images.☆14Apr 14, 2023Updated 3 years ago
- Deep Learning segmentation suite designed for 2D microscopy image segmentation☆10Dec 17, 2021Updated 4 years ago
- A plugin that enables image segmentation provided by Allen Institute for Cell Science☆20Nov 18, 2025Updated 6 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python.☆21May 10, 2026Updated last week
- ☆13Aug 16, 2024Updated last year
- Microsopic Image Analyzer (MIA)☆28Aug 19, 2025Updated 9 months ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆34Oct 8, 2025Updated 7 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Feb 17, 2025Updated last year
- An ImageJ script to align and stitch three-dimensional tiles and quickly explore terabyte-sized microscopy datasets☆13Feb 22, 2022Updated 4 years ago
- Segment Anything Model (SAM) interactive demo with OpenVINO☆13Jun 5, 2024Updated last year
- simple package for augmentation of n-dimensional arrays☆34Aug 10, 2023Updated 2 years ago
- RAnking Markers for CEll Segmentation☆12Feb 22, 2022Updated 4 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Image augmentation for machine learning experiments.☆20Feb 3, 2026Updated 3 months ago
- open source version of VAMPIRE analysis : visually-aided morpho-phenotyping recognition☆30Apr 5, 2022Updated 4 years ago
- An implementation of Mask R-CNN designed for single-cell instance segmentation in the context of multiplexed tissue imaging☆11May 18, 2022Updated 4 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆20Mar 14, 2021Updated 5 years ago
- Evaluation of Deep Learning Strategies for Nucleus Segmentation in Fluorescence Images☆14Feb 4, 2019Updated 7 years ago
- Volumetric data obtained with focused ion beam combined with scanning electron microscopy (FIB-SEM) and labels for mitochondria, endolyso…☆14May 15, 2023Updated 3 years ago
- Command-line client for Fractal☆48May 12, 2026Updated last week
- Automated Segmentation of cellular substructures in Electron Microscopy☆18Jan 28, 2026Updated 3 months ago
- ☆22Oct 6, 2024Updated last year
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A user-friendly library that brings familiar DataFrame-style operations to AnnData objects with a simple and expressive API.☆17Updated this week
- A Python package using Gromov-Wasserstein distance to compare cell shapes☆22Mar 29, 2026Updated last month
- ☆53Apr 20, 2026Updated last month
- napari widgets for start-to-finish batch processing☆15Apr 1, 2026Updated last month
- Deep Learning for EM Connectomics☆16Aug 18, 2022Updated 3 years ago
- Matlab implementation of several methods for cell detection and cell segmentation☆16Jun 26, 2020Updated 5 years ago
- This is a repository of IAMSAM, an image-based ST analysis tool☆22Jun 24, 2025Updated 10 months ago
- CLI tool that turns your current git changes into conventional git add/commit commands using Gemini.☆21Feb 21, 2026Updated 3 months ago
- List of Computer Science courses with video lectures.☆12Nov 6, 2024Updated last year
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- ☆22Sep 20, 2025Updated 8 months ago
- A lean and kind Open Microscopy Environment (OME) Next Generation File Format (NGFF) Zarr implementation.☆70Updated this week
- This is a new version of Learning Active Learning which uses reinforcement learning☆13May 17, 2022Updated 4 years ago
- cryo_fit1 source codes, test files, live at .../phenix-xxxx/modules☆10Mar 25, 2022Updated 4 years ago
- VISION is a sophisticated software tool specifically designed to analyze and process biological and microscopic images.