bleach1by1 / BIRDS_pluginLinks
BIRDS plug-in on Fiji and attached jar package
☆20Updated 3 years ago
Alternatives and similar repositories for BIRDS_plugin
Users that are interested in BIRDS_plugin are comparing it to the libraries listed below
Sorting:
- ☆18Updated 3 years ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆33Updated last month
- Tools for distributed alignment of massive images☆86Updated 2 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆40Updated 4 months ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 5 years ago
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆52Updated last week
- ☆45Updated 5 years ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆18Updated 2 years ago
- ☆13Updated 6 months ago
- ABBA, controlled from python☆15Updated 2 weeks ago
- Create movies from series of key-frames in napari.☆38Updated 4 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆23Updated 3 years ago
- The ImageJ framework for quantification of neuronal anatomy☆50Updated last week
- An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)☆12Updated 2 years ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- Efficient cell detection in large images using cellfinder in napari☆22Updated last year
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆105Updated last week
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆36Updated last year
- Python scripts library for Aivia. Ask your questions on the forum >>☆15Updated 2 weeks ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 9 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 9 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆123Updated this week
- Brainways☆20Updated 3 months ago
- Generate markdown notebooks from ImageJ Macro☆25Updated 4 years ago
- GPU-based 3D non-rigid volumetric registration☆41Updated this week
- Reconstruct big images from overlapping tiled images on a Spark cluster.☆34Updated last year
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆22Updated 3 weeks ago