bleach1by1 / BIRDS_plugin
BIRDS plug-in on Fiji and attached jar package
☆18Updated 3 years ago
Alternatives and similar repositories for BIRDS_plugin:
Users that are interested in BIRDS_plugin are comparing it to the libraries listed below
- ☆18Updated 3 years ago
- Flow-Registration toolbox for 2P motion compensation☆23Updated 8 months ago
- A tool for manual pointwise deformable registration using bigdataviewer.☆28Updated 2 weeks ago
- Tools for distributed alignment of massive images☆81Updated this week
- ☆34Updated last year
- ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.☆53Updated 4 years ago
- A napari plugin to render BrainGlobe atlases and associated data as layers.☆21Updated last week
- Registration to BrainGlobe atlases in napari using Elastix☆22Updated last week
- Fiji pipeline for automated serial section reconstruction and mouse brain analysis.☆29Updated last year
- ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing☆21Updated 2 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated last year
- ☆18Updated 3 years ago
- A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.☆37Updated last year
- ABBA, controlled from python☆11Updated 3 weeks ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 4 months ago
- A python package which aligns histology to the Allen Brain Atlas and Waxholm rat atlas using deep learning.☆91Updated last week
- ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)☆49Updated last month
- Brainways☆16Updated last month
- Read and write files from the BrainGlobe neuroanatomy suite☆14Updated last week
- Implementation of "Precise Mapping of Single Neurons by Calibrated 3D Reconstruction of Brain Slices Reveals Topographic Projection in Mo…☆14Updated 2 years ago
- The ImageJ framework for quantification of neuronal anatomy☆48Updated this week
- Efficient cell detection in large images using cellfinder in napari☆23Updated last year
- Rendering anatomical heatmaps with brainrender and matplotlib☆40Updated last week
- Segmentation of anatomical structures in a common coordinate space☆30Updated last week
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- Create movies from series of key-frames in napari.☆37Updated 3 years ago
- MethodsJ2☆14Updated 2 years ago
- EASI-FISH analysis pipeline for spatial transcriptomics☆34Updated 5 months ago
- ClearMap 2 with WobblyStitcher, TubeMap and CellMap☆120Updated last week
- Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)☆16Updated 3 weeks ago