bleach1by1 / BIRDS_plugin

Related projects ⓘ

Alternatives and complementary repositories for BIRDS_plugin

• Gubra-ApS / LSFM-mouse-brain-atlas
  ☆18Updated 2 years ago
• saalfeldlab / bigwarp
  A tool for manual pointwise deformable registration using bigdataviewer.
  ☆27Updated last week
• ChristophKirst / ClearMap
  ClearMap is a python toolbox for the analysis and registration of volumetric data from cleared tissues.
  ☆52Updated 4 years ago
• CellMigrationLab / Fast4DReg
  Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…
  ☆37Updated 3 weeks ago
• phflot / flow_registration
  Flow-Registration toolbox for 2P motion compensation
  ☆21Updated 3 months ago
• dterstege / FASTMAP
  ImageJ Plugin for Flexible Atlas Segmentation Tool for Multi-Area Processing
  ☆20Updated 2 years ago
• NicoKiaru / ABBA-Python
  How to use Aligning Big Brains and Atlases with Python
  ☆13Updated last year
• embl-cba / elastixWrapper
  ☆13Updated 2 years ago
• JaneliaSciComp / bigstream
  Tools for distributed alignment of massive images
  ☆75Updated last week
• bkntr / brainways
  Brainways
  ☆14Updated last week
• albert597 / TRAILMAP
  ☆45Updated 4 years ago
• PrincetonUniversity / BrainPipe
  ☆18Updated 2 years ago
• vsnnlab / AMaSiNe
  ☆14Updated 2 years ago
• brainglobe / slicereg
  A 2D-3D histological brain slice registration application for mouse, rat, zebrafish brains.
  ☆37Updated 11 months ago
• BIOP / ijp-imagetoatlas
  ABBA - Aligning Big Brains and Atlases (2D sections to 3D atlas registration)
  ☆48Updated last week
• brainglobe / brainglobe-registration
  Registration to BrainGlobe atlases in napari using Elastix
  ☆13Updated 2 weeks ago
• brainglobe / brainglobe-napari-io
  Read and write files from the BrainGlobe neuroanatomy suite
  ☆13Updated last week
• ariel-waisman / LabelsToROIs
  A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification
  ☆21Updated 3 years ago
• lahammond / BrainJ
  Fiji pipeline for automated serial section reconstruction and mouse brain analysis.
  ☆28Updated last year
• brainglobe / brainrender-napari
  A napari plugin to render BrainGlobe atlases and associated data as layers.
  ☆20Updated last week
• morphonets / SNT
  The ImageJ framework for quantification of neuronal anatomy
  ☆42Updated this week
• ClearAnatomics / ClearMap
  ClearMap 2 with WobblyStitcher, TubeMap and CellMap
  ☆114Updated last month
• guiwitz / naparimovie
  Create movies from series of key-frames in napari.
  ☆38Updated 3 years ago
• easy-electrophysiology / easy-electrophysiology-analysis
  Analysis code for Easy Electrophysiology (www.easyelectrophysiology.com)
  ☆15Updated 3 weeks ago
• SuperElastix / elastix-napari
  A napari plugin for itk-elastix
  ☆38Updated 5 months ago
• ved-sharma / HyperStackReg
  An ImageJ/FIJI plugin for multi-channel Hyperstack alignment (registration)
  ☆11Updated last year
• nadavyayon / Intensify3D
  Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…
  ☆18Updated 3 years ago
• fmi-basel / LSTree
  LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.
  ☆18Updated last year
• brainglobe / cellfinder-napari
  Efficient cell detection in large images using cellfinder in napari
  ☆24Updated 10 months ago
• UU-cellbiology / ZstackDepthColorCode
  Z-stack Depth Colorcode ImageJ FIJI plugin
  ☆22Updated 3 years ago