wershofe / TWOMBLILinks
☆11Updated last year
Alternatives and similar repositories for TWOMBLI
Users that are interested in TWOMBLI are comparing it to the libraries listed below
Sorting:
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 6 months ago
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 3 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated this week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated last week
- ☆14Updated last week
- Python scripts library for Aivia. Ask your questions on the forum >>☆14Updated 2 weeks ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last month
- "Defragmentation: bringing BioImage Analysts to the cloud!” training school for the new generation of bioimage analysts. Topics: workflow…☆15Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆16Updated 3 months ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated last month
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 6 months ago
- Course and exercises on deep learning for microscopy image analysis☆17Updated this week
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 4 months ago
- Multiple file format reading directly into napari using pure Python☆36Updated 10 months ago
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated last month
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆17Updated 2 months ago
- Running compute-intense parts of BigStitcher distributed☆26Updated last week
- ☆10Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆29Updated 2 months ago
- ☆12Updated last year
- A platform for compiling, analyzing, and exploring tracking data☆44Updated 2 months ago