wershofe / TWOMBLILinks
☆12Updated last year
Alternatives and similar repositories for TWOMBLI
Users that are interested in TWOMBLI are comparing it to the libraries listed below
Sorting:
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆21Updated last month
- StarDist plugin for ImageJ☆31Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 2 years ago
- Tools for distributed alignment of massive images☆85Updated 2 weeks ago
- ☆14Updated last week
- ☆19Updated last week
- A visualization app for 3D-registered data processed in ABBA and QuPath☆17Updated 2 years ago
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆37Updated 2 months ago
- Bringing the ZeroCostDL4Mic experience running everywhere via easy-to-install docker images☆80Updated 3 months ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 8 months ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆28Updated 3 months ago
- Lab for quantitative bioimage analysis experiments in Python☆13Updated 6 months ago
- Accurate and efficient spot detection for microscopy data☆92Updated last week
- Nanoscopy library for Python (NanoPyx, the successor to NanoJ) - focused on light microscopy and super-resolution imaging☆80Updated 3 weeks ago
- ☆12Updated last year
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆17Updated 2 weeks ago
- The ImageJ wiki☆27Updated last week
- ☆26Updated 3 months ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 8 months ago
- 3D shape analysis using deep learning☆25Updated last year
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆74Updated 4 months ago
- StarDist plugin for napari☆40Updated 11 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- MultiModal Big Image Data Sharing and Exploration☆16Updated 2 years ago
- an extension that wraps a Cellpose environment such that WSI can be analyzed using Cellpose through QuPath.☆75Updated 3 weeks ago
- The official QuPath extension for InstanSeg☆24Updated 3 weeks ago
- Segmentation method able to detect membrane/nuclei-labelled cells with low signal-to-noise ratio and dense packing in 2D and 3D. Availabl…☆33Updated 3 weeks ago
- SplineDist: Automated Cell Segmentation with Spline Curves☆67Updated 10 months ago
- ☆36Updated last month
- GPU-accelerated image processing in QuPath☆15Updated 3 years ago