wershofe / TWOMBLI
☆11Updated last year
Alternatives and similar repositories for TWOMBLI:
Users that are interested in TWOMBLI are comparing it to the libraries listed below
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated last month
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆18Updated 4 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated 4 months ago
- MorphoFeatures code and data☆20Updated last year
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 3 months ago
- ☆16Updated last month
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆33Updated 2 years ago
- Tools for distributed alignment of massive images☆81Updated last month
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- Process and analyze surfaces using vedo in napari.☆23Updated 10 months ago
- Python scripts library for Aivia. Ask your questions on the forum >>☆14Updated 4 months ago
- A platform for compiling, analyzing, and exploring tracking data☆43Updated last week
- GPU-accelerated, OpenCL-based Random Forest Classifiers for pixel and labeled object classification in napari.☆43Updated last year
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated last year
- StarDist plugin for ImageJ☆28Updated 2 years ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆22Updated 3 years ago
- Napari Visualization tool for Trackmate > 6.0 and bTrackmate XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated last week
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- ☆12Updated 10 months ago
- ☆18Updated 2 years ago
- StarDist plugin for napari☆37Updated 6 months ago
- MethodsJ2☆14Updated 2 years ago
- QuPath extension for Cellsparse☆18Updated 3 months ago
- ☆10Updated last year
- A tool for manual pointwise deformable registration using bigdataviewer.☆27Updated last month
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 4 months ago
- Easy Volumetric Segmentation with Deep Learning☆24Updated 3 weeks ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated last week
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last month