wershofe / TWOMBLILinks
☆14Updated last year
Alternatives and similar repositories for TWOMBLI
Users that are interested in TWOMBLI are comparing it to the libraries listed below
Sorting:
- Generate consensus 3D cells segmentations by combining 2D cell segmentations from any combination of xy, xz, yz views, compatible with ou…☆43Updated 3 weeks ago
- A visualization app for 3D-registered data processed in ABBA and QuPath☆20Updated 3 years ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆35Updated 3 years ago
- ☆16Updated 2 months ago
- Tools for distributed alignment of massive images☆89Updated 2 months ago
- 3D shape analysis using deep learning☆27Updated 2 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- StarDist plugin for ImageJ☆30Updated 3 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆24Updated 2 weeks ago
- A platform for compiling, analyzing, and exploring tracking data☆47Updated 3 months ago
- QuPath extension for Cellsparse☆19Updated 7 months ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 4 years ago
- ☆30Updated last month
- ☆20Updated last month
- StarDist plugin for napari☆38Updated last year
- SplineDist: Automated Cell Segmentation with Spline Curves☆69Updated last year
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆30Updated 7 months ago
- A napari plugin for clustering objects according to their properties.☆87Updated last week
- MorphoFeatures code and data☆22Updated 2 years ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆19Updated last month
- Python scripts library for Aivia. Ask your questions on the forum >>☆14Updated last week
- Nellie: Automated organelle segmentation, tracking, and hierarchical feature extraction in 2D/3D live-cell microscopy☆86Updated last week
- Wrappers for external software calls (Cellpose, Elastix, Ilastix...) and java utilities (object conversions and display)☆39Updated last week
- ☆37Updated this week
- Accurate and efficient spot detection for microscopy data☆111Updated last week
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆18Updated 2 months ago
- GPU-accelerated image processing in QuPath☆16Updated 4 years ago
- A tutorial of classical shape analysis methods☆11Updated 2 years ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆20Updated 2 years ago
- ☆18Updated 3 years ago