wershofe / TWOMBLI
☆11Updated last year
Alternatives and similar repositories for TWOMBLI
Users that are interested in TWOMBLI are comparing it to the libraries listed below
Sorting:
- Python-based Human-In-the-LOop Workflow: PHILOW is an interactive deep learning-based platform for 3D datasets☆26Updated 2 months ago
- 3D Extension of the Cellpose Algorithm by Stringer et al., 2021.☆36Updated 2 years ago
- A plugin based on scikit-image for segmenting nuclei and cells based on fluorescent microscopy images with high intensity in nuclei and/o…☆26Updated last week
- MultiModal Big Image Data Sharing and Exploration☆14Updated 2 years ago
- ZELDA: a 3D Image Segmentation and Parent to Child relation plugin for microscopy image analysis in napari☆20Updated 5 months ago
- Intensify3D is an image normalization tool for large scale fluorescent imaging. It corrects heterogeneities in the signal (defined by the…☆19Updated 4 years ago
- Benchmarking Large Language Models for Bio-Image Analysis Code Generation☆23Updated 5 months ago
- Process and analyze surfaces using vedo in napari.☆24Updated last year
- ☆16Updated 2 months ago
- LSTree is a digital organoid and lineage tree extraction workflow for light sheet movies.☆18Updated last year
- A template repo used to make new napari plugins☆20Updated last week
- ☆18Updated 3 years ago
- Tools for distributed alignment of massive images☆81Updated 3 weeks ago
- FIJI plugin for tracing of curvilinear structures in volumetric microscopy datasets☆29Updated last week
- ☆11Updated last month
- some useful function to get Label from ROIs and vice versa , and more!☆12Updated 2 years ago
- Fast4DReg is a Fiji script for quick drift correction in time-lapse 3D-stacks. The script can be used to correct drift in all x-, y- and/…☆39Updated 3 weeks ago
- Napari Visualization tool for Trackmate > 6.0 XML files for 2/3D + time tracks. Available via pip package napatrackmater.☆16Updated 2 weeks ago
- A Fiji/ImageJ plugin to generate ROIs from label images, allowing ROI erosion and quantification☆23Updated 3 years ago
- How to use Aligning Big Brains and Atlases with Python☆15Updated 2 years ago
- StarDist plugin for ImageJ☆29Updated 3 years ago
- ImageJ / Fiji macro to automatically export Leica LIF file as individual images (batch mode available)☆11Updated 3 years ago
- This repository hosts notebooks, information and data for the Quantitative Bio-Image Analysis with Python Course 2022.☆15Updated 2 years ago
- StarDist plugin for napari☆38Updated 8 months ago
- An automated point-set based registration algorithm for correlative light and electron microscopy (CLEM)☆16Updated 2 weeks ago
- ☆12Updated last year
- ☆16Updated 9 months ago
- Z-stack Depth Colorcode ImageJ FIJI plugin☆24Updated 4 years ago
- MethodsJ2☆14Updated 3 years ago
- MorphoFeatures code and data☆21Updated 2 years ago