Workflow to visualize pggb graphs in jbrowse
☆11Mar 15, 2024Updated 2 years ago
Alternatives and similar repositories for jbrowse-visualization
Users that are interested in jbrowse-visualization are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Classify chimeric reads based on unique kmer contents☆14Aug 30, 2026Updated last month
- MEMO: MEM-based pangenome indexing for k-mer queries☆20Jun 11, 2024Updated 2 years ago
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- ☆21Dec 13, 2024Updated last year
- TR annotation tool VAMPIRE☆18Sep 2, 2026Updated last month
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- convert CHAIN format to PAF format☆15Dec 17, 2024Updated last year
- a precise pangenome browser combining linear and graph-based pan-genome☆13Jul 16, 2024Updated 2 years ago
- Pangenome graphs visualisation, distance computing, reconstruction of sequences and other utility functions☆38Apr 28, 2026Updated 5 months ago
- Long-read aligner to pangenome graphs☆29May 20, 2024Updated 2 years ago
- lace up GFA files using panSN path name sub-ranges to coordinate the lacing☆14Jul 30, 2025Updated last year
- Inferring natural selection by comparative population genomic analysis across species☆28Oct 31, 2023Updated 2 years ago
- Post-verkko graph and assembly curation in Python.☆37Oct 9, 2026Updated last week
- Multiple sequence alignment of long tandem repeats☆34Oct 9, 2026Updated last week
- PAF (pairwise alignment format) validator based on extended CIGAR strings☆15Aug 10, 2025Updated last year
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- ☆15Jun 29, 2021Updated 5 years ago
- A viewer for multiple alignment format (MAF) files in JBrowse 2☆14Aug 4, 2026Updated 2 months ago
- Rust binding for WFA2-lib☆10Jun 7, 2022Updated 4 years ago
- A multiscale pangenome browser☆36Jul 18, 2026Updated 3 months ago
- GFA visualization tool - Rust reimplementation of odgi viz☆15May 2, 2026Updated 5 months ago
- ☆24Apr 15, 2024Updated 2 years ago
- A filter algorithm with program to filter an alignment or mapping file☆12May 15, 2025Updated last year
- ☆31Mar 27, 2024Updated 2 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆13Dec 10, 2025Updated 10 months ago
- Genotyping of copy number sensitive allele-specific haplotypes☆29Aug 28, 2026Updated last month
- Identifying large scale inversions between two genomes by mapping genome 1's unique kmers onto genome 2.☆10Jun 6, 2025Updated last year
- ☆33Jul 13, 2026Updated 3 months ago
- ☆17Updated this week
- Panacus is a tool for computing statistics for GFA-formatted pangenome graphs☆139Sep 8, 2026Updated last month
- Compares pangenome graphs by calculating the segmentation distance between two GFA (Graphical Fragment Assembly) files.☆15Apr 28, 2026Updated 5 months ago
- WinPCA. A package for windowed principal component analysis.☆54Jun 9, 2026Updated 4 months ago
- COsine SImilarity-based Genotyper using pangenomes☆40Updated this week
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Genotyping lots of samples with big pangenomes☆11Oct 30, 2025Updated 11 months ago
- ☆13Nov 15, 2017Updated 8 years ago
- HitSV: Maximizing discovery of structural variants across sequencing technologies☆43Aug 12, 2026Updated 2 months ago
- a tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees☆32Jul 13, 2026Updated 3 months ago
- The complete sequence of a Chinese individual☆14Oct 8, 2024Updated 2 years ago
- The tool is employed for the visualisation of genome-wide contact heatmaps.☆14Apr 14, 2025Updated last year
- Telomere local assembly, Improved whole genome polish, and Plastid assembly☆22Apr 25, 2025Updated last year