petrelharp / popbioLinks
a short graduate population biology course
☆12Updated 2 years ago
Alternatives and similar repositories for popbio
Users that are interested in popbio are comparing it to the libraries listed below
Sorting:
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆56Updated 6 months ago
- A statistical framework for reference-free inference of archaic local ancestry☆16Updated 6 years ago
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Updated 2 weeks ago
- ☆13Updated last year
- Fast and accurate tool for estimating genomic distances between genome-skims☆47Updated 2 years ago
- ☆21Updated last year
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 7 years ago
- Tools for inference of the DFE with dadi☆14Updated 4 years ago
- Drawing functions for Demes demographic models☆23Updated last week
- Sampling and inference of genealogies with recombination☆47Updated 6 months ago
- PoSeiDon: positive selection detection and recombination analysis pipeline☆39Updated 3 months ago
- predicting DFE and alpha from polymorphism data☆28Updated 7 years ago
- Sampling and manipulating genome-wide ancestral recombination graphs (ARGs)☆14Updated 2 years ago
- A statistical framework for ploidy estimation using NGS short-read data☆62Updated 7 years ago
- Script for removing or counting invariant sites for the RAxML ascertainment bias corrections☆16Updated last year
- Analyze and simulate Pool-Seq time series data☆17Updated 3 years ago
- ☆13Updated 4 years ago
- A reimplementation of a classical PSMC method in python for educational purposes☆17Updated last year
- SNP genotyping in polyploids☆17Updated 5 years ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Ploidy agnostic phasing pipeline and algorithm☆48Updated last year
- Scripts for reformatting data. Mainly from tab separated to an esoteric program specific format☆13Updated 10 months ago
- Bayesian gene tree reconciliation and WGD inference using amalgamated likelihood estimation☆16Updated 8 months ago
- PREQUAL: a pre-alignment quality filter for comparative sequence analyses☆33Updated 3 years ago
- compare sequences to a shared root reference sequence.☆24Updated 4 years ago
- Infer the age of ancestral nodes in a tree sequence.☆24Updated 3 months ago
- R package for comparing mixture solutions to similarity data, with a focus STRUCTURE like models to ChromoPainter palettes☆29Updated 6 years ago
- Infer demographic history with the Moran model☆50Updated 6 months ago
- Automated and Distributed Population Genetic Model Inference from Allele Frequency Spectra☆18Updated 3 weeks ago
- Improved Phased Assembler☆28Updated 3 years ago