a short graduate population biology course
☆13Feb 22, 2023Updated 3 years ago
Alternatives and similar repositories for popbio
Users that are interested in popbio are comparing it to the libraries listed below
Sorting:
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- Distribution maps and niche models for venomous snakes.☆12May 25, 2022Updated 3 years ago
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- The powerful `awk` script to calculate pi, Dxy and Fst in polyploid VCF files with mixed-ploidy groups support☆31Feb 26, 2026Updated last week
- ☆13Dec 3, 2024Updated last year
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- An R function to compute Concordance Factors from SNP datasets☆15Dec 4, 2025Updated 3 months ago
- ☆14Jul 12, 2022Updated 3 years ago
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆18Feb 19, 2026Updated 2 weeks ago
- Recombination Landscape Estimation using Recurrent Neural Networks☆66Nov 30, 2025Updated 3 months ago
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 3 months ago
- COCACOLA: a general framework for binning contigs in metagenomic studies incorporating read COverage, CorrelAtion, sequence COmposition a…☆17Mar 12, 2017Updated 8 years ago
- Drawing functions for Demes demographic models☆24Mar 2, 2026Updated last week
- deep learning prediction of geographic location from individual genome sequences☆52Jan 20, 2025Updated last year
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆60Jun 27, 2025Updated 8 months ago
- fast, pure-python interval overlap testing☆52Oct 2, 2020Updated 5 years ago
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆32Mar 8, 2025Updated last year
- Pipeline to take VCF through to Selection Analysis.☆58Dec 11, 2022Updated 3 years ago
- Practical Haplotype Graph (PHG) version 2☆30Updated this week
- Pedigree simulator☆30Dec 15, 2025Updated 2 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated last month
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆212Updated this week
- Population-scale Ancestral Recombination Graph (ARG) library☆177Mar 2, 2026Updated last week
- Genetic maps in autopolyploids☆31Jan 12, 2026Updated last month
- a broadly applicable tool for automated gene identification and retrieval☆40Feb 22, 2026Updated 2 weeks ago
- Haplotype based scans for selection☆142Updated this week
- Prepares a SARS-CoV-2 submission for GISAID, NCBI or ENA. Can read GISAID or NCBI files, or plain fasta+tsv/csv/xls. Finds files in input…☆36May 1, 2022Updated 3 years ago
- ☆34Nov 11, 2025Updated 3 months ago
- An R package for estimating generalized additive mixed models with latent variables☆34Dec 21, 2025Updated 2 months ago
- A High Performance Interface to GBIF☆40Sep 14, 2025Updated 5 months ago
- An R package providing helper functions to interact with timeseries of worldwide climate reconstructions☆40Feb 11, 2026Updated 3 weeks ago
- method for modeling continuous and discrete population genetic structure☆38Jan 8, 2024Updated 2 years ago
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Effective selection of population size projection for construction of the site frequency spectrum. Convert VCF to dadi/fastsimcoal style …☆172Aug 8, 2024Updated last year
- Example iOS app using the open-source combustion-ios-ble framework.☆11Aug 2, 2023Updated 2 years ago
- ☆13Jan 31, 2020Updated 6 years ago
- R package for distributional modeling in 3 dimensions☆10Sep 26, 2025Updated 5 months ago
- Tutorial on using popular tools for learning about population history☆53Jul 18, 2018Updated 7 years ago
- The DNAnexus incremental upload script packaged as an Ansible Role☆13Apr 7, 2025Updated 11 months ago