a short graduate population biology course
☆13Feb 22, 2023Updated 3 years ago
Alternatives and similar repositories for popbio
Users that are interested in popbio are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- [mu]tation [s]pectrum [h]istory [i]nference☆27Jan 9, 2025Updated last year
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 6 years ago
- Distribution maps and niche models for venomous snakes.☆11Mar 22, 2026Updated 4 months ago
- bcftools-compatible querying and format conversion for VCF Zarr☆27Jun 8, 2026Updated 2 months ago
- The `awk` script to calculate population stats in VCF files: convenient, simple, flexible☆32May 28, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- ☆14Dec 3, 2024Updated last year
- Recombination Landscape Estimation using Recurrent Neural Networks☆70Mar 27, 2026Updated 4 months ago
- An R function to compute Concordance Factors from SNP datasets☆16Dec 4, 2025Updated 8 months ago
- deep learning prediction of geographic location from individual genome sequences☆54Jan 20, 2025Updated last year
- An R package for predicting ploidal level from sequence data using site-based heterozygosity☆20Updated this week
- Polyploid micro-haplotype assembly using Markov chain Monte Carlo simulation.☆20Nov 17, 2025Updated 9 months ago
- fast, pure-python interval overlap testing☆52Oct 2, 2020Updated 5 years ago
- intro to programming for IE2 evolution students☆12Jan 31, 2024Updated 2 years ago
- Population-scale Ancestral Recombination Graph (ARG) library☆189Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A High Performance Interface to GBIF☆40Sep 14, 2025Updated 11 months ago
- A framework for simulation-based inference in evolutionary biology☆28Jan 13, 2026Updated 7 months ago
- An R package for estimating generalized additive mixed models with latent variables☆36Aug 4, 2026Updated 2 weeks ago
- ☆14Jul 12, 2022Updated 4 years ago
- SLiM is a genetically explicit forward simulation software package for population genetics and evolutionary biology. It is highly flexib…☆228Updated this week
- baltic - adaptable lightweight tree import code for molecular phylogeny manipulation, analysis and visualisation. This fork will no longe…☆12Dec 18, 2019Updated 6 years ago
- QTG_Finder, a QTL causal gene prioritization tool☆11Nov 9, 2024Updated last year
- an interactive visualization and interpretation framework of reference-projected pangenome graphs☆42Feb 15, 2025Updated last year
- Genotype Calling with Uncertainty from Sequencing Data in Polyploids 🍌🍓🥔🍠🥝☆33Mar 23, 2026Updated 4 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- flopp is a software package for single individual haplotype phasing of polyploid organisms from long read sequencing.☆37Nov 3, 2023Updated 2 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆62Jun 27, 2025Updated last year
- R package for distributional modeling in 3 dimensions☆12Jul 23, 2026Updated 3 weeks ago
- A chromosomal visualization package for python.☆15Apr 13, 2026Updated 4 months ago
- Repo for the JupyterHub deployment for ENGR114 Winter 2018☆12Mar 9, 2019Updated 7 years ago
- Genetic maps in autopolyploids☆33Jan 12, 2026Updated 7 months ago
- Drawing functions for Demes demographic models☆25Jul 20, 2026Updated 3 weeks ago
- ☆13Jan 31, 2020Updated 6 years ago
- A mosaic genome painting tool for plant genomes☆18May 6, 2026Updated 3 months ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ☆13May 13, 2024Updated 2 years ago
- Statistics and analysis for variation graphs☆52Dec 17, 2024Updated last year
- An R package providing helper functions to interact with timeseries of worldwide climate reconstructions☆41Jul 13, 2026Updated last month
- A pipeline for phylogenetic diversity analysis of GBIF-mediated data☆13May 30, 2025Updated last year
- Resolving Species Level Classification Using Emu☆14Jun 14, 2024Updated 2 years ago
- Biodiversity Genomics Academy 2023: Understanding k-mers and ploidy using Smudgeplot☆11Sep 12, 2023Updated 2 years ago
- ☆10Sep 11, 2020Updated 5 years ago