Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
☆21Oct 28, 2025Updated 4 months ago
Alternatives and similar repositories for KGD
Users that are interested in KGD are comparing it to the libraries listed below
Sorting:
- filtering SNPs based on LD and HWE status☆10Jul 3, 2023Updated 2 years ago
- ☆13Apr 18, 2022Updated 3 years ago
- ☆11Dec 24, 2024Updated last year
- Prioritizing Copy Number Variants (CNV) using Phenotype and Gene Functional Similarity☆17Mar 10, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- STRspy: a novel alignment and quantification-based state-of-the-art method, short tandem repeat (STR) detection calling tool designed spe…☆18Feb 21, 2026Updated last week
- Lift-over alignments from variant-aware references☆34Mar 4, 2023Updated 2 years ago
- SNP genotyping in polyploids☆17Aug 12, 2020Updated 5 years ago
- Mapping-free variant caller for short-read Illumina data☆20Apr 2, 2020Updated 5 years ago
- Scripts in R for Landscape Genomics Analyses v.2☆10Feb 17, 2023Updated 3 years ago
- Pipeline in place at the UGI for DNA level analysis☆11Aug 29, 2016Updated 9 years ago
- ☆12Feb 16, 2025Updated last year
- Powerful statistics for VCF files☆73Nov 16, 2025Updated 3 months ago
- Toolkit for VNTR genotyping and repeat-pan genome graph construction☆31Aug 18, 2025Updated 6 months ago
- Population Genomics in R workshop☆12Mar 24, 2024Updated last year
- ☆11Dec 9, 2022Updated 3 years ago
- Using genome-wide markers for polyploid breeding☆12Dec 25, 2025Updated 2 months ago
- Fitting latent factor mixed models☆13Jun 12, 2020Updated 5 years ago
- Implementation of eBWT using Prefix-free parse (PFP)☆14Jul 14, 2025Updated 7 months ago
- ☆11Apr 3, 2023Updated 2 years ago
- Source code for the program MavericK, described fully at www.bobverity.com/maverick☆12Jun 21, 2018Updated 7 years ago
- Code used to process and analyze structural variants and short tandem repeat variants profiled in 719 deeply sequenced whole genomes as p…☆11Jun 25, 2019Updated 6 years ago
- Codes for the Iso-Seq variant-calling paper☆11Apr 28, 2023Updated 2 years ago
- ☆27Aug 29, 2025Updated 6 months ago
- FastK based version of Merqury☆32Jan 19, 2026Updated last month
- Lightweight resources assembly algorithm☆19May 17, 2017Updated 8 years ago
- An online pedigree tool for research applications. Build pedigrees interactively and store as images or text files in ped format. QuickPe…☆31Feb 9, 2026Updated 2 weeks ago
- Evaluation of phasing performance☆23Mar 6, 2018Updated 7 years ago
- This is the official development repository for BaseVar, which call variants for large-scale ultra low-pass (<1.0x) WGS data, especially …☆27Jul 28, 2025Updated 7 months ago
- Reference-free variant discovery in large eukaryotic genomes☆42Jul 13, 2021Updated 4 years ago
- SEEKIN: SEquence-based Estimation of KINship☆14Oct 11, 2017Updated 8 years ago
- ☆11Jun 26, 2020Updated 5 years ago
- Bacterial typing pipeline for clinical NGS data. Written in NextFlow, Python & Bash.☆13Feb 19, 2026Updated last week
- ☆14Oct 29, 2021Updated 4 years ago
- Multivariate adaptive shrinkage methods used for analysis GTEx data in Urbut et al (2017).☆12Sep 25, 2017Updated 8 years ago
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- semi-reference-based short read compression☆11Mar 5, 2019Updated 6 years ago
- Wrapper for short and long read mapping, creation of quality report(s) and estimation of genome size☆12Sep 30, 2025Updated 5 months ago
- Simulating Sequence Evolution☆11Jul 9, 2024Updated last year