AgResearch / KGD
Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
☆21Updated 3 months ago
Related projects ⓘ
Alternatives and complementary repositories for KGD
- Pipeline for structural variant image curation and analysis.☆48Updated 2 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 8 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 3 years ago
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- ☆28Updated 2 weeks ago
- Population-wide Deletion Calling☆35Updated 2 months ago
- Module for analysing admixture graphs☆28Updated 6 years ago
- Population genetics analyses from NGS data☆25Updated 3 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 2 years ago
- ☆42Updated 11 months ago
- Runs a combination of tools to generate structural variant calls on short-read whole-genome sequencing data☆20Updated 3 years ago
- R Package to Estimate Variable Recombination Rates using Population Genetic Data☆39Updated 5 years ago
- ☆11Updated 5 years ago
- Tools for inference of the DFE with dadi☆14Updated 3 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Genome-wide scan for balancing selection using beta statistic☆27Updated last year
- ☆17Updated 8 years ago
- Python HyPhy: Facilitating HyPhy execution and parsing☆21Updated 2 years ago
- R-package: Calculation of haplotype blocks and libraries☆27Updated 8 months ago
- ☆23Updated 5 years ago
- compare sequences to a shared root reference sequence.☆24Updated 3 years ago
- Make Pseudo-Reference Genome from VCF/BCF☆13Updated 4 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 4 years ago
- A tool for phasing and imputing haplotypes in 10k+ low coverage sequencing samples☆10Updated 4 years ago
- An R package to detect selection in biological pathways☆14Updated 10 months ago
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆16Updated last month
- ABLE - Approximate Blockwise Likelihood Estimation☆17Updated 6 years ago
- Merge transcriptome assemblies☆30Updated 8 years ago
- Analysis of genotyping and next-generation sequencing data in medical and population genetics☆23Updated 2 years ago