AgResearch / KGDLinks
Kinship (genetic relatedness) using GBS (genotyping-by-sequencing) with Depth adjustment
☆21Updated 2 weeks ago
Alternatives and similar repositories for KGD
Users that are interested in KGD are comparing it to the libraries listed below
Sorting:
- Pipeline for structural variant image curation and analysis.☆48Updated 3 years ago
- A program for the Maximum-likelihood analysis of population genomic data.☆28Updated 4 years ago
- Assembly by Reduced Complexity (ARC)☆41Updated 9 years ago
- Suite of tools for pangenomics built using vg☆22Updated last month
- Utilities for analyzing next generation sequencing data☆17Updated 6 years ago
- Assembler for raw de novo genome assembly of long uncorrected reads.☆37Updated 5 years ago
- Transposable element polymorphism identification☆33Updated 4 years ago
- Tools to convert to and from vcf format☆14Updated 7 years ago
- Population-wide Deletion Calling☆35Updated last month
- Estimation of per-individual inbreeding tracts under a probabilistic framework☆14Updated last year
- ☆30Updated last month
- Transfer coordinates across genomes☆23Updated last week
- Evaluation of phasing performance☆23Updated 7 years ago
- Framework for analyzing low depth NGS data in heterogeneous populations using PCA.☆51Updated 2 weeks ago
- Evolutionary Transcriptomics with R☆43Updated this week
- Exact Tandem Repeat Finder (not a TRF replacement)☆49Updated 5 years ago
- BayeScEnv is a Fst-based, genome-scan method that uses environmental variables to detect local adaptation.☆19Updated 7 years ago
- SelectionHapStats is a repository of Python scripts written to identify natural selection events in the genome and R scripts written to v…☆26Updated 6 years ago
- R-package: Calculation of haplotype blocks and libraries☆30Updated 3 months ago
- Genome-wide scan for balancing selection using beta statistic☆29Updated 2 years ago
- Haplotype and population structure inference using neural networks.☆27Updated 6 months ago
- Merge transcriptome assemblies☆31Updated 8 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆56Updated 3 years ago
- ☆43Updated 2 months ago
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Tools for making blobplots or Taxon-Annotated-GC-Coverage plots (TAGC plots) to visualise the contents of genome assembly data sets as a …☆46Updated 3 years ago
- Genealogical Estimation of Variant Age (GEVA)☆29Updated 3 years ago
- a simple C++ library for parsing and manipulating VCF files, + many command-line utilities☆20Updated 8 years ago
- Tools and Utilities for msmc and msmc2☆47Updated last year
- Population genetics analyses from NGS data☆25Updated 4 years ago