Alternatives and similar repositories for panoptes

Users that are interested in panoptes are comparing it to the libraries listed below

• marcelm / dnaio
  Efficiently read and write sequencing data from Python
  ☆68Updated last month
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• snakemake / snakemake-github-action
  A Github action for running a Snakemake workflow
  ☆61Updated last week
• refgenie / refgenie
  Reference genome resource manager
  ☆74Updated last year
• mdshw5 / simplesam
  Simple pure Python SAM parser and objects for working with SAM records
  ☆64Updated 3 years ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆52Updated 11 months ago
• roryk / tiny-test-data
  Super small biological datasets for unit testing
  ☆62Updated 6 years ago
• slowkow / pytabix
  Retrieve data in genomic intervals with a Python interface for tabix.
  ☆82Updated 8 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆66Updated last week
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 4 months ago
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆20Updated 4 years ago
• snakemake-workflows / cookiecutter-snakemake-workflow
  A cookiecutter template for Snakemake workflows
  ☆60Updated 3 years ago
• snakemake-workflows / dna-seq-varlociraptor
  A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …
  ☆86Updated this week
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆49Updated last year
• stjudecloud / workflows
  Bioinformatics workflows developed for and used on the St. Jude Cloud project.
  ☆38Updated last week
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• dpryan79 / libBigWig
  A C library for handling bigWig files
  ☆81Updated 10 months ago
• grst / snakemake_nextflow_wdl
  simple comparison of snakemake, nextflow and cromwell/wdl
  ☆50Updated 5 years ago
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 6 months ago
• pepkit / peppy
  Project metadata manager for PEPs in Python
  ☆38Updated this week
• Snakemake-Profiles / doc
  Documentation of the Snakemake-Profiles project.
  ☆54Updated 3 years ago
• Clinical-Genomics / BALSAMIC
  Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer
  ☆55Updated this week
• goodwright / nextflow.py
  Python wrapper around Nextflow.
  ☆60Updated 3 weeks ago
• igvteam / igv-notebook
  Module for embedding igv.js in an IPython notebook
  ☆80Updated 9 months ago
• JohnLonginotto / pybam
  Very simple, pure python, BAM file reader
  ☆79Updated 6 years ago
• snakemake-workflows / snakemake-workflow-template
  A template for standard compliant snakemake-workflows
  ☆115Updated 3 weeks ago
• brentp / fishers_exact_test
  Fishers Exact Test for Python (Cython)
  ☆66Updated 8 months ago
• ialbert / bio
  Making bioinformatics fun again
  ☆74Updated last month
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆30Updated 2 months ago