panoptes-organization / panoptesView external linksLinks
Monitor computational workflows in real time
☆74May 23, 2024Updated last year
Alternatives and similar repositories for panoptes
Users that are interested in panoptes are comparing it to the libraries listed below
Sorting:
- The snakemake interface, currently works like a notebook (under development)☆20Jan 14, 2022Updated 4 years ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Apr 19, 2018Updated 7 years ago
- The uncompromising Snakemake code formatter☆182Jan 22, 2026Updated 3 weeks ago
- ☆21Dec 26, 2025Updated last month
- The Zavolab Automated RNA-seq Pipeline☆36Jan 29, 2026Updated 2 weeks ago
- Documentation of the Snakemake-Profiles project.☆55Mar 15, 2022Updated 3 years ago
- ☆11Apr 3, 2023Updated 2 years ago
- A (very) fast program for getting statistics about a fastq file, the way I need them, written in Rust☆32Nov 14, 2025Updated 2 months ago
- deploy a snakemake pipeline directly from version control (under development)☆24Jan 14, 2026Updated 3 weeks ago
- Sweep-line algorithm for genomic features. Detect overlaps on large files w/ minimal memory.☆10Sep 13, 2011Updated 14 years ago
- A TUI for monitoring Snakemake workflows in real-time.☆50Dec 18, 2025Updated last month
- Documentation of the Snakemake-Workflows project☆156Feb 2, 2022Updated 4 years ago
- A Jupyter wrapper for the igv.js library (representation of genomic data)☆26Feb 16, 2021Updated 4 years ago
- BIH Cluster Wiki☆18Oct 21, 2025Updated 3 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated this week
- a pileup library that embraces the huge☆43Oct 2, 2020Updated 5 years ago
- Load numpy arrays and HDF5 files from VCF (variant call format)☆31Jun 27, 2017Updated 8 years ago
- Tutorial with snakemake and Scientific Filesystem☆16Nov 11, 2020Updated 5 years ago
- Client for the Cromwell workflow engine☆17Mar 7, 2024Updated last year
- python (cython) wrapper for https://github.com/ryanlayer/giggle for fast interval searching of huge datasets.☆15Feb 13, 2018Updated 8 years ago
- Iterate over minimizers of a DNA sequence☆31Jul 12, 2024Updated last year
- Welcome page and service overview☆17Mar 29, 2023Updated 2 years ago
- Clin-mNGS: Automated pipeline for pathogen detection from clinical metagenomic data☆18Jun 29, 2021Updated 4 years ago
- TIDDIT - structural variant calling☆78Dec 8, 2025Updated 2 months ago
- A copy number caller for SMN1 and SMN2 to enable SMA diagnosis and carrier screening with WGS☆51Oct 14, 2023Updated 2 years ago
- Extends miniwdl to run workflows on AWS Batch & EFS☆22Feb 5, 2024Updated 2 years ago
- Library for indexing VCF files for random access searches by rsID☆17Feb 2, 2026Updated last week
- Cookiecutter for snakemake slurm profile☆134Apr 25, 2024Updated last year
- Genomic interval operations on Pandas DataFrames☆188Feb 2, 2026Updated last week
- FASTQ sequence quality visualisation with Emoji☆170Dec 29, 2025Updated last month
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated this week
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Sep 17, 2023Updated 2 years ago
- A utility script to manage local docker instances of HiGlass☆24Jul 6, 2023Updated 2 years ago
- Tools for working with SAM/BAM data☆605Dec 22, 2024Updated last year
- A Variant Call Format reader for Python.☆58May 6, 2025Updated 9 months ago
- seqcover allows users to view coverage for hundreds of genes and dozens of samples☆52Apr 9, 2021Updated 4 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 4 years ago
- tools and notes for long reads analysis☆24Mar 31, 2025Updated 10 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Jun 13, 2022Updated 3 years ago