panoptes-organization / panoptesLinks
Monitor computational workflows in real time
☆73Updated last year
Alternatives and similar repositories for panoptes
Users that are interested in panoptes are comparing it to the libraries listed below
Sorting:
- Reference genome resource manager☆74Updated last month
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆88Updated last week
- Efficiently read and write sequencing data from Python☆69Updated 3 months ago
- A Github action for running a Snakemake workflow☆62Updated last month
- simple comparison of snakemake, nextflow and cromwell/wdl☆50Updated 5 years ago
- A C library for handling bigWig files☆81Updated last year
- Simple pure Python SAM parser and objects for working with SAM records☆64Updated 3 years ago
- Documentation of the Snakemake-Profiles project.☆54Updated 3 years ago
- Retrieve data in genomic intervals with a Python interface for tabix.☆82Updated 8 years ago
- A cookiecutter template for Snakemake workflows☆60Updated 3 years ago
- Super small biological datasets for unit testing☆62Updated 6 years ago
- Modular job submitter for arbitrary pipelines or commands.☆24Updated 2 months ago
- Python wrapper around Nextflow.☆61Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- a minimal, scriptable genome browser for python☆53Updated last year
- Fast sequencing data quality metrics☆31Updated 4 months ago
- Project metadata manager for PEPs in Python☆38Updated 2 weeks ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Bioinformatics workflows developed for and used on the St. Jude Cloud project.☆38Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆65Updated 8 months ago
- A python package and a set of shell commands to handle GTF files☆50Updated last month
- A read extraction and realignment tool for next generation sequencing data☆104Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 3 years ago
- Nextflow language support for Visual Studio Editor☆37Updated 2 weeks ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated 6 months ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 2 weeks ago
- conda recipes for genomic data☆84Updated 4 years ago