A utility script to manage local docker instances of HiGlass
☆24Jul 6, 2023Updated 2 years ago
Alternatives and similar repositories for higlass-manage
Users that are interested in higlass-manage are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆34May 31, 2022Updated 4 years ago
- Server component for HiGlass that manages and serves tiled data☆21May 23, 2023Updated 3 years ago
- Slides and demos from our SciPyConf 2019 talk☆13Sep 28, 2021Updated 4 years ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Apr 20, 2026Updated 2 months ago
- HiGlass track for displaying arcs between disconnected regions☆10Dec 13, 2022Updated 3 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Multi-scale Detection of Chromatin Loops from Hi-C and Micro-C Maps using Scale-Space Representation☆83Jan 24, 2025Updated last year
- A versatile tool to perform pile-up analysis on Hi-C data in .cool format.☆82Oct 31, 2024Updated last year
- Python bindings to UCSC BigWig and BigBed library☆36Jun 22, 2026Updated last week
- Lightweight converter between hic and cool contact matrices.☆74Jul 15, 2024Updated last year
- The tools for your .cool's☆166Mar 19, 2026Updated 3 months ago
- Genomic interval operations on Pandas DataFrames☆193Jun 22, 2026Updated last week
- Fast, flexible and extensible genome browser.☆340Jun 17, 2026Updated last week
- SELFISH is a tool for finding differential chromatin interactions between two Hi-C contact maps.☆17Jun 1, 2023Updated 3 years ago
- A cool place to store your Hi-C☆240Jun 22, 2026Updated last week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A library to compute histograms on distributed environments, on streaming data☆23Mar 10, 2025Updated last year
- Extract 3D contacts (.pairs) from sequencing alignments☆133Feb 3, 2026Updated 4 months ago
- A modular Hi-C mapping pipeline☆105Dec 5, 2024Updated last year
- A reference panel guided topological structure annotation of Hi-C data☆10Mar 23, 2023Updated 3 years ago
- Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …☆14Dec 22, 2025Updated 6 months ago
- FIREcaller: an R package for detecting frequently interacting re-gions from Hi-C data☆14Nov 4, 2022Updated 3 years ago
- ☆22May 26, 2020Updated 6 years ago
- Docker for 4DN Hi-C processing pipeline☆61Nov 26, 2024Updated last year
- A python script used to annotate genomic intervals.☆18May 29, 2020Updated 6 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Processing and plotting tools for genomics data☆22Jun 15, 2026Updated 2 weeks ago
- Architectural stripe detection from 3D genome conformation data☆19Sep 15, 2025Updated 9 months ago
- Pore-C support☆54Feb 22, 2023Updated 3 years ago
- A pipeline for Bacterial Whole genome sequence data analysis☆15Jul 24, 2022Updated 3 years ago
- genomic alignment similarity search tool☆18May 15, 2025Updated last year
- Software to compute reproducibility and quality scores for Hi-C data☆52Apr 12, 2019Updated 7 years ago
- Fast Structural Variation Detection Toolbox☆19Feb 16, 2015Updated 11 years ago
- ☆12Dec 21, 2021Updated 4 years ago
- Dockerfiles for HDF related containers☆17Sep 4, 2024Updated last year
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A toolkit for analyzing architectural stripes☆22Dec 1, 2024Updated last year
- Cooler demo using a Jupyter notebook Binder☆19Sep 24, 2020Updated 5 years ago
- sharing interactive single cell gene expression visualizations from Seurat☆13May 18, 2023Updated 3 years ago
- single-cell Hi-C, scHi-C, Hi-C, 3D genome, nuclear organization, tensor decomposition☆21Sep 12, 2023Updated 2 years ago
- FAN-C: Framework for the ANalysis of C-like data☆121Mar 13, 2024Updated 2 years ago
- Benchmark on adaptive banded algorithm☆19Feb 26, 2023Updated 3 years ago
- ☆11Dec 12, 2014Updated 11 years ago