higlass / higlass-manageLinks
A utility script to manage local docker instances of HiGlass
☆24Updated 2 years ago
Alternatives and similar repositories for higlass-manage
Users that are interested in higlass-manage are comparing it to the libraries listed below
Sorting:
- Python bindings to UCSC BigWig and BigBed library☆33Updated 3 months ago
- Python reimplementation of hicrep with compatibility for sparse matrices☆18Updated 2 years ago
- a minimal, scriptable genome browser for python☆51Updated 6 months ago
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆40Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated last month
- The script presents a simple way to visualize features on human chromosome ideograms☆42Updated 2 months ago
- Blazing fast toolkit to work with .hic and .cool files☆31Updated 2 weeks ago
- Server component for HiGlass that manages and serves tiled data☆20Updated 2 years ago
- Deep learning-based structural variant filtering method☆39Updated last year
- ✂️ Deep learning-based splice site predictor that improves spliced alignments☆53Updated 4 months ago
- Builds a docker container wrapping higlass-server and higlass-client in nginx☆32Updated 3 years ago
- Processing and plotting tools for genomics data☆20Updated last week
- A Python library to visualize and analyze long-read transcriptomes☆62Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 5 months ago
- ☆79Updated last month
- Methods for summarizing and visualizing multi-biosample functional genomic annotations☆46Updated 3 months ago
- Comparison of Hi-C Experiments using Structural Similarity.☆28Updated last year
- Reference genome resource manager☆76Updated last year
- HATCHet (Holistic Allele-specific Tumor Copy-number Heterogeneity) is an algorithm that infers allele and clone-specific CNAs and WGDs jo…☆69Updated 4 months ago
- BigWig and BAM utilities☆96Updated last year
- snakemake pipeline for Hi-C post-processing☆22Updated last year
- ☆26Updated last week
- vembrane filters VCF records using python expressions☆61Updated this week
- bedtools-like functionality for interval sets in rust☆52Updated 10 months ago
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆31Updated last month
- Master of Pores 2☆23Updated 7 months ago
- Efficiently read and write sequencing data from Python☆64Updated last month
- An efficient CLI to extract sequences from the SRA☆108Updated 3 weeks ago
- Fast sequencing data quality metrics☆26Updated last month
- Kourami: Graph-guided assembly for HLA alleles☆39Updated 6 years ago