higlass / higlass-manageLinks
A utility script to manage local docker instances of HiGlass
☆24Updated 2 years ago
Alternatives and similar repositories for higlass-manage
Users that are interested in higlass-manage are comparing it to the libraries listed below
Sorting:
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- Processing and plotting tools for genomics data☆21Updated 2 months ago
- Software to assemble contigs/scaffolds into chromosomes using Hi-C data☆28Updated last year
- Blazing fast toolkit to work with .hic and .cool files☆41Updated this week
- Merging paired-end reads and removing adapters☆30Updated 5 years ago
- for visual evaluation of read support for structural variation☆55Updated last year
- Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.☆39Updated 6 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆25Updated 9 years ago
- The script presents a simple way to visualize features on human chromosome ideograms☆42Updated 6 months ago
- a minimal, scriptable genome browser for python☆51Updated 10 months ago
- MIP based joint inference of copy number and rearrangement state in cancer whole genome sequence data.☆59Updated 7 months ago
- Reference genome resource manager☆74Updated last year
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- DMR Identification Tool☆34Updated 2 years ago
- Server component for HiGlass that manages and serves tiled data☆20Updated 2 years ago
- Genome Contact Map Explorer - gcMapExplorer. Visit:☆21Updated 3 years ago
- vembrane filters VCF records using python expressions☆66Updated last month
- Ktrim: an extra-fast and accurate adapter- and quality-trimmer for sequencing data☆31Updated last month
- simple library for dealing with SAM cigar strings☆41Updated 4 years ago
- HiCtrans is a pipeline to call translocations from Hi-C data☆14Updated 4 years ago
- Fast calculations of linkage-disequilibrium in large-scale human cohorts☆44Updated 5 years ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…☆36Updated 4 months ago
- Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data☆59Updated last week
- deSALT - De Bruijn graph-based Spliced Aligner for Long Transcriptome reads☆44Updated 3 years ago
- Gene Fusion Visualiser☆51Updated 2 years ago
- ☆23Updated 5 months ago
- BigWig and BAM utilities☆98Updated last year
- Deep learning-based structural variant filtering method☆39Updated last year
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 10 months ago