Alternatives and similar repositories for higlass-manage:

Users that are interested in higlass-manage are comparing it to the libraries listed below

• agalitsyna / RedClib
  Red-C data processing
  ☆14Updated last year
• paulsengroup / hictk
  Blazing fast toolkit to work with .hic and .cool files
  ☆28Updated this week
• higlass / clodius
  Clodius is a tool for breaking up large data sets into smaller tiles that can subsequently be displayed using an appropriate viewer.
  ☆39Updated last month
• cmdoret / hicreppy
  Python reimplementation of hicrep with compatibility for sparse matrices
  ☆17Updated 2 years ago
• vierstralab / genome-tools
  Processing and plotting tools for genomics data
  ☆20Updated 3 weeks ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated 6 months ago
• alevar / ORFanage
  Ultra-efficient and sensitive method to search for Open Reading Frames in spliced genomes guided by reference annotation to maximize prot…
  ☆27Updated last week
• PacificBiosciences / svpack
  Structural variant (SV) analysis tools
  ☆35Updated 8 months ago
• higlass / higlass-server
  Server component for HiGlass that manages and serves tiled data
  ☆19Updated last year
• XiaoTaoWang / TADLib
  A Library to Explore Chromatin Interaction Patterns for Topologically Associating Domains
  ☆40Updated 2 years ago
• epi2me-labs / wf-pore-c
  ☆37Updated last month
• agalitsyna / fontanka
  Fontanka is a set of tools to work with fountains in Hi-C data. It aims to provide a flexible Python API and specialized CLI for calling …
  ☆11Updated last year
• epi2me-labs / pore-c-py
  ☆13Updated 7 months ago
• pkerpedjiev / negspy
  Python NGS Repository
  ☆9Updated 7 months ago
• GooglingTheCancerGenome / sv-channels
  Deep learning-based structural variant filtering method
  ☆38Updated last year
• KolmogorovLab / Wakhan
  Haplotype-specific somatic copy number aberrations/profiling from long reads sequencing data
  ☆42Updated last week
• agalitsyna / avTAD
  Plotting average TAD heatmap for Hi-C data (give TAD segmentation and cool/hiclib interactions map).
  ☆10Updated 3 years ago
• HudsonAlpha / CSL_public_benchmark
  Location of public benchmarking; primarily final results
  ☆18Updated last month
• nvictus / pybbi
  Python bindings to UCSC BigWig and BigBed library
  ☆32Updated 2 months ago
• KolmogorovLab / minda
  ☆14Updated 2 weeks ago
• mcfrith / dnarrange
  ☆16Updated 2 months ago
• lh3 / sdust
  Symmetric DUST for finding low-complexity regions in DNA sequences
  ☆37Updated last year
• smithlabcode / abismal
  Abismal is a mapper of FASTQ bisulfite-converted short reads (between 50 and 1000 bases) to a FASTA reference genome.
  ☆17Updated last month
• YingZhou001 / Immuannot
  Immuological gene typing and annotation for genome assembly
  ☆35Updated 2 weeks ago
• Snakemake-Profiles / lsf
  Snakemake profile for running jobs on an LSF cluster
  ☆36Updated 7 months ago
• deeptools / HiCMatrix
  ☆12Updated 10 months ago
• hoffmangroup / umap
  ☆26Updated 11 months ago
• seqcode / allo
  Allo: a multi-mapped read rescue strategy for gene regulatory analyses
  ☆24Updated 6 months ago
• jts / bri
  Bam Read Index - Extract alignments from a bam file by readname
  ☆25Updated 11 months ago
• rjdkmr / gcMapExplorer
  Genome Contact Map Explorer - gcMapExplorer. Visit:
  ☆21Updated 3 years ago