bihealth / bih-clusterLinks
BIH Cluster Wiki
☆18Updated 3 months ago
Alternatives and similar repositories for bih-cluster
Users that are interested in bih-cluster are comparing it to the libraries listed below
Sorting:
- A template for standard compliant snakemake-workflows☆121Updated last week
- Convert bioinformatics file formats to Zarr☆43Updated last week
- A Github action for running a Snakemake workflow☆62Updated last month
- Course website "Docker and Singularity for reproducible research: getting started with containers"☆34Updated this week
- Documentation for PEP specification and all PEPkit software☆10Updated 3 weeks ago
- Cookiecutter for snakemake slurm profile☆134Updated last year
- Tabular seff☆89Updated last week
- Nextflow Tower CLI tool☆51Updated this week
- Practical course on running jobs on a HPC☆21Updated 2 months ago
- [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows☆44Updated 2 years ago
- ☆33Updated 5 months ago
- FireCloud Service Selector (FISS) -- Python bindings and CLI for FireCloud execution engine☆33Updated last week
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Tutorial with snakemake and Scientific Filesystem☆16Updated 5 years ago
- Webinars&Tutorial on Containers on HPC and Cloud with Singularity☆27Updated 4 years ago
- The snakemake interface, currently works like a notebook (under development)☆20Updated 4 years ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated last month
- A collection of cwl-ica workflows along with a user guide for the commands to use and contributions guide☆13Updated last week
- A simple Snakemake profile for Slurm without --cluster-config☆165Updated last year
- a minimal, scriptable genome browser for python☆53Updated last year
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated 2 weeks ago
- deploy a snakemake pipeline directly from version control (under development)☆24Updated last week
- An awesome tool to visualize snakemake rule graphs☆14Updated last week
- Monitor computational workflows in real time☆73Updated last year
- The uncompromising Snakemake code formatter☆182Updated 2 months ago
- Nextflow language support for Visual Studio Editor☆37Updated 3 weeks ago
- a place for GA4GH-related wiki pages☆16Updated 8 years ago
- This repository contains the source code of JUDI, a workflow management system for developing complex bioinformatics software with many p…☆33Updated 4 years ago
- A Python package for gene network analysis☆32Updated 3 years ago