cademirch / snkmtLinks
A TUI for monitoring Snakemake workflows in real-time.
☆47Updated last month
Alternatives and similar repositories for snkmt
Users that are interested in snkmt are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Snakemake workflow management system and CLI generation tool☆63Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆119Updated 2 months ago
- bedtools-like functionality for interval sets in rust☆55Updated 5 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last month
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆143Updated last month
- Experimental features for Nextflow☆47Updated 3 weeks ago
- A high-performance BigWig and BigBed library in Rust☆111Updated 3 months ago
- an API for intersections of genomic data☆140Updated last month
- Python wrapper around Nextflow.☆61Updated 2 months ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated last month
- Making bioinformatics fun again☆74Updated last month
- Monitor computational workflows in real time☆73Updated last year
- Efficiently read and write sequencing data from Python☆69Updated 3 months ago
- Nextflow language support for Visual Studio Editor☆37Updated 2 weeks ago
- a minimal, scriptable genome browser for python☆53Updated last year
- Per-base per-nucleotide depth analysis☆143Updated last month
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Nextflow Tower CLI tool☆51Updated this week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- A Github action for running a Snakemake workflow☆62Updated last month
- Fast sequencing data quality metrics☆31Updated 4 months ago
- A C library for handling bigWig files☆81Updated last year
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated last month
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Single-cell analysis methods in Rust☆28Updated 2 months ago
- Cookiecutter for snakemake slurm profile☆134Updated last year