cademirch / snkmtLinks
A TUI for monitoring Snakemake workflows in real-time.
☆46Updated last week
Alternatives and similar repositories for snkmt
Users that are interested in snkmt are comparing it to the libraries listed below
Sorting:
- A Rust library and command line tool for working with genomic ranges and their data.☆101Updated last year
- Snakemake workflow management system and CLI generation tool☆63Updated 2 months ago
- bedtools-like functionality for interval sets in rust☆55Updated 4 months ago
- Python wrapper around Nextflow.☆61Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆118Updated last month
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- A high-performance BigWig and BigBed library in Rust☆110Updated 2 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- A Snakemake executor plugin for submitting jobs to a SLURM cluster☆45Updated last week
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆33Updated last month
- Monitor computational workflows in real time☆74Updated last year
- A Github action for running a Snakemake workflow☆62Updated 2 weeks ago
- Cookiecutter for snakemake slurm profile☆134Updated last year
- Efficiently read and write sequencing data from Python☆69Updated 2 months ago
- Parse GFF3 into Pandas dataframes☆30Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Experimental features for Nextflow☆48Updated 4 months ago
- an API for intersections of genomic data☆136Updated 2 weeks ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last month
- Testing building mulled containers for multi-requirement tools.☆83Updated this week
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆134Updated 3 weeks ago
- Making bioinformatics fun again☆74Updated 3 weeks ago
- Per-base per-nucleotide depth analysis☆141Updated 2 weeks ago
- A C library for handling bigWig files☆81Updated 11 months ago
- A template for standard compliant snakemake-workflows☆120Updated 2 months ago
- a minimal, scriptable genome browser for python☆53Updated last year
- vembrane filters VCF records using python expressions☆67Updated 2 weeks ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Grep for FASTQ files☆103Updated 2 weeks ago